Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BVG18_RS01035 Genome accession   NZ_CP019143
Coordinates   222027..223166 (-) Length   379 a.a.
NCBI ID   WP_086044344.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ZS207     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 217027..228166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG18_RS01010 (BVG18_06650) - 217252..218268 (-) 1017 WP_086044340.1 pirin family protein -
  BVG18_RS01015 (BVG18_06655) - 218410..219009 (-) 600 WP_086044341.1 hypothetical protein -
  BVG18_RS01020 (BVG18_06660) - 219338..219883 (-) 546 WP_086044342.1 glutathione peroxidase -
  BVG18_RS01025 (BVG18_06665) - 220074..220970 (+) 897 WP_004644871.1 DMT family transporter -
  BVG18_RS01030 (BVG18_06670) - 221416..221985 (-) 570 WP_086044343.1 Sua5/YciO/YrdC/YwlC family protein -
  BVG18_RS01035 (BVG18_06675) dprA 222027..223166 (-) 1140 WP_086044344.1 DNA-processing protein DprA Machinery gene
  BVG18_RS01040 (BVG18_06680) tsaP 223223..224377 (-) 1155 WP_086044345.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BVG18_RS01045 (BVG18_06685) def 224498..225028 (+) 531 WP_004644875.1 peptide deformylase -
  BVG18_RS01050 (BVG18_06690) - 225121..225531 (+) 411 WP_005108420.1 DUF2946 family protein -
  BVG18_RS01055 (BVG18_06695) - 225604..227634 (+) 2031 WP_086044346.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42491.31 Da        Isoelectric Point: 6.6655

>NTDB_id=213361 BVG18_RS01035 WP_086044344.1 222027..223166(-) (dprA) [Acinetobacter lwoffii strain ZS207]
MLNPLSRAQLETITLWYLVQHSLSSFYKISQHYAELAHALQPDQVPVWQALGLHANHVQRLKEFYLPEAQQKFQRCLQQI
QQDSDFILLHSDPHYPQQLHPYADNPPIIFGQGRSDTLLQAQIAIVGSRKPSPHGRQVAYDFAFYLSEQGFYINSGLAYG
IDEAAHRAALQHQGTIAVMATGLDQTYPAQHQSLRQQIIEHGGAVISEFLPDTLPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAIPGHIYSEHYQGCHQLIREGAILIDHPQQVIEELALATQWQALENTTKTKVTEATSQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=213361 BVG18_RS01035 WP_086044344.1 222027..223166(-) (dprA) [Acinetobacter lwoffii strain ZS207]
ATGCTGAACCCGTTATCACGCGCGCAACTGGAAACAATTACGTTATGGTATCTGGTTCAGCATTCTCTTTCGAGTTTCTA
TAAAATCAGTCAACATTATGCCGAACTGGCGCATGCCCTTCAGCCGGATCAAGTACCCGTCTGGCAAGCACTCGGCCTTC
ATGCCAATCATGTGCAGCGCTTAAAAGAGTTTTACCTCCCAGAAGCGCAGCAAAAATTTCAGCGATGTCTGCAGCAGATC
CAGCAGGATAGCGATTTTATTTTGCTGCACAGCGATCCGCATTATCCTCAGCAGTTGCATCCTTATGCAGATAACCCCCC
AATCATTTTTGGTCAGGGTAGATCCGATACCCTGCTTCAGGCACAGATTGCCATTGTGGGCAGCCGCAAACCCAGTCCAC
ACGGCCGGCAAGTAGCTTATGACTTTGCTTTTTATTTGAGTGAACAGGGTTTCTATATCAATAGCGGTCTGGCATACGGT
ATTGATGAAGCAGCGCATCGGGCTGCGTTACAGCATCAAGGCACGATTGCGGTGATGGCGACCGGACTGGATCAAACCTA
TCCAGCACAACATCAATCACTACGCCAGCAAATCATTGAGCACGGTGGTGCAGTAATCAGTGAGTTTCTACCAGATACGC
TGCCTTTGCAGCACCATTTCCCACGGCGCAACCGAATCGTCAGTGGTTTAAGTCTAGGTGTGATTGTGGCAGAAGCTGCA
TTAAAAAGTGGTTCTCTGATTACGGCTAAACTGGCAGCTGAGCAAGGTAAAACTGTGTTTGCCATTCCGGGACATATTTA
CAGCGAGCATTATCAGGGTTGTCACCAACTGATTCGTGAGGGTGCGATTCTGATTGATCATCCACAGCAGGTCATCGAAG
AACTGGCACTGGCGACGCAATGGCAGGCTTTAGAAAATACCACCAAAACGAAAGTTACTGAAGCAACATCACAGCAAATT
CCACCGCATCTGCTCAGTCTGTATAATCAGCTGGACTGGGTGGGACAGAGTTTGGATCAACTGGGAACGCAGGTTCAGCA
AGAGGTATCTGCTTTGACCAGCCAACTCATGGAACTGGAGTTACTCGGTTTTTGTACCCAGCAAGCCGGCCTCTATCTAC
GTTGTCGGATTCTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.362

99.208

0.639

  dprA Acinetobacter baumannii D1279779

63.298

99.208

0.628

  dprA Acinetobacter baylyi ADP1

59.211

100

0.594


Multiple sequence alignment