Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   BVG18_RS01040 Genome accession   NZ_CP019143
Coordinates   223223..224377 (-) Length   384 a.a.
NCBI ID   WP_086044345.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ZS207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218223..229377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG18_RS01015 (BVG18_06655) - 218410..219009 (-) 600 WP_086044341.1 hypothetical protein -
  BVG18_RS01020 (BVG18_06660) - 219338..219883 (-) 546 WP_086044342.1 glutathione peroxidase -
  BVG18_RS01025 (BVG18_06665) - 220074..220970 (+) 897 WP_004644871.1 DMT family transporter -
  BVG18_RS01030 (BVG18_06670) - 221416..221985 (-) 570 WP_086044343.1 Sua5/YciO/YrdC/YwlC family protein -
  BVG18_RS01035 (BVG18_06675) dprA 222027..223166 (-) 1140 WP_086044344.1 DNA-processing protein DprA Machinery gene
  BVG18_RS01040 (BVG18_06680) tsaP 223223..224377 (-) 1155 WP_086044345.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BVG18_RS01045 (BVG18_06685) def 224498..225028 (+) 531 WP_004644875.1 peptide deformylase -
  BVG18_RS01050 (BVG18_06690) - 225121..225531 (+) 411 WP_005108420.1 DUF2946 family protein -
  BVG18_RS01055 (BVG18_06695) - 225604..227634 (+) 2031 WP_086044346.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42208.48 Da        Isoelectric Point: 9.0687

>NTDB_id=213362 BVG18_RS01040 WP_086044345.1 223223..224377(-) (tsaP) [Acinetobacter lwoffii strain ZS207]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRSDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKNFDQLSYAYVLESELPIKMGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=213362 BVG18_RS01040 WP_086044345.1 223223..224377(-) (tsaP) [Acinetobacter lwoffii strain ZS207]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCCGTTTGTGT
CGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTAGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTACGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCACATTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCCGTGATTCCGCTTGAACATATTAAGCAGTGGCTGGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTGGGTCAACGCTATGCCGTTTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACTGCTGCACTTGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCAGTGATCGTGTCTTACCAGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTTGTCACCATTGACCGTGGTACGGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTGACTGATCCGAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAAATCATGGTATTCAAAAACTTCGATCAATTAAGTTATGCCTATGTGCTAGAGAGCGAATTACCAATCAAGATGG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.273

100

0.674

Multiple sequence alignment