Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FORC54_RS14800 Genome accession   NZ_CP019121
Coordinates   2931115..2931705 (-) Length   196 a.a.
NCBI ID   WP_045609935.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_054     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2926115..2936705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS14775 (FORC54_2660) aroB 2926388..2927479 (-) 1092 WP_011079358.1 3-dehydroquinate synthase -
  FORC54_RS14780 (FORC54_2661) aroK 2927512..2928030 (-) 519 WP_011079357.1 shikimate kinase AroK -
  FORC54_RS14785 (FORC54_2662) pilQ 2928232..2930016 (-) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  FORC54_RS14790 (FORC54_2663) pilP 2930030..2930542 (-) 513 WP_101958982.1 pilus assembly protein PilP Machinery gene
  FORC54_RS14795 (FORC54_2664) pilO 2930532..2931122 (-) 591 WP_101958983.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC54_RS14800 (FORC54_2665) pilN 2931115..2931705 (-) 591 WP_045609935.1 PilN domain-containing protein Machinery gene
  FORC54_RS14805 (FORC54_2666) pilM 2931695..2932702 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  FORC54_RS14810 (FORC54_2667) - 2932842..2935355 (+) 2514 WP_101958984.1 penicillin-binding protein 1A -
  FORC54_RS14815 (FORC54_2668) oxyR 2935424..2936323 (-) 900 WP_026050199.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22635.85 Da        Isoelectric Point: 7.6075

>NTDB_id=213349 FORC54_RS14800 WP_045609935.1 2931115..2931705(-) (pilN) [Vibrio vulnificus strain FORC_054]
MQHKINLLPWRENKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=213349 FORC54_RS14800 WP_045609935.1 2931115..2931705(-) (pilN) [Vibrio vulnificus strain FORC_054]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAAAACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTATTCAGTGGGGTATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAGCTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

68.508

92.347

0.633
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment