Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FORC54_RS14805 Genome accession   NZ_CP019121
Coordinates   2931695..2932702 (-) Length   335 a.a.
NCBI ID   WP_017419656.1    Uniprot ID   A0A087I1V6
Organism   Vibrio vulnificus strain FORC_054     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2926695..2937702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC54_RS14780 (FORC54_2661) aroK 2927512..2928030 (-) 519 WP_011079357.1 shikimate kinase AroK -
  FORC54_RS14785 (FORC54_2662) pilQ 2928232..2930016 (-) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  FORC54_RS14790 (FORC54_2663) pilP 2930030..2930542 (-) 513 WP_101958982.1 pilus assembly protein PilP Machinery gene
  FORC54_RS14795 (FORC54_2664) pilO 2930532..2931122 (-) 591 WP_101958983.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC54_RS14800 (FORC54_2665) pilN 2931115..2931705 (-) 591 WP_045609935.1 PilN domain-containing protein Machinery gene
  FORC54_RS14805 (FORC54_2666) pilM 2931695..2932702 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  FORC54_RS14810 (FORC54_2667) - 2932842..2935355 (+) 2514 WP_101958984.1 penicillin-binding protein 1A -
  FORC54_RS14815 (FORC54_2668) oxyR 2935424..2936323 (-) 900 WP_026050199.1 DNA-binding transcriptional regulator OxyR -
  FORC54_RS14820 (FORC54_2669) - 2936597..2936869 (+) 273 WP_017419653.1 DUF3624 domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37654.05 Da        Isoelectric Point: 6.3873

>NTDB_id=213350 FORC54_RS14805 WP_017419656.1 2931695..2932702(-) (pilM) [Vibrio vulnificus strain FORC_054]
MGKPFVTGIDIGHRSLKAVILKPYGEHYALLGYKEIIIKDGIFSDNHTLNHQEIVNSLKELKKELPLFRYQVSLAVPDSS
VISKMLSIDAELDGREREFAILQAFAHQSPFPVDELSIDYVQLVEETSKTNHSYQVYATKKEVVESRVRVAEEVGLKPVL
VDVHAHSLCNILTLAAERHPDKASYCLLDVGYDTTSLVMSRRNEPPLVKEFAYGVSHLNASIGDDLTSPDAHEKTDIFNK
ELTERVRRQLQLFQSMDSQSKVNGLWICGEGAITPLLSETLQRKLSLECEVLNPLALFEQKTAKRKRRIVDWHHFSVAAG
LAIGGIQWLEDSHAA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=213350 FORC54_RS14805 WP_017419656.1 2931695..2932702(-) (pilM) [Vibrio vulnificus strain FORC_054]
ATGGGTAAACCGTTCGTTACCGGAATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCTTATGGAGAGCA
CTACGCCCTGTTAGGGTACAAAGAAATAATCATTAAAGACGGTATTTTCTCAGATAACCACACTCTGAATCATCAAGAAA
TTGTCAATAGCCTGAAAGAACTGAAGAAGGAGTTGCCTCTTTTCCGTTATCAGGTGTCACTGGCGGTACCCGATAGTTCA
GTGATTAGCAAGATGTTATCGATCGATGCGGAGTTGGATGGTCGAGAACGAGAGTTCGCTATCCTTCAGGCGTTTGCACA
TCAGTCGCCATTTCCTGTCGATGAATTATCGATTGATTATGTCCAATTGGTCGAAGAAACCAGCAAAACGAATCATAGCT
ATCAAGTTTACGCCACCAAAAAAGAGGTGGTGGAAAGCCGAGTGCGTGTCGCAGAAGAAGTGGGACTGAAACCCGTGCTG
GTAGATGTACATGCGCATAGCCTGTGCAACATCTTAACGTTAGCGGCAGAGCGCCATCCAGACAAAGCCAGCTATTGCTT
GTTGGATGTGGGTTATGACACCACCTCTTTGGTGATGTCGCGTCGCAACGAACCACCTTTGGTTAAAGAATTTGCCTATG
GGGTGTCTCACCTTAATGCGTCGATAGGCGACGACCTGACTTCTCCTGATGCTCATGAGAAAACCGACATCTTTAATAAA
GAGCTGACAGAGCGAGTTCGTCGGCAATTGCAGTTGTTCCAATCCATGGATAGCCAAAGCAAAGTGAATGGCCTTTGGAT
CTGCGGTGAAGGCGCGATTACGCCGTTGTTGAGTGAAACTTTGCAGAGAAAGCTGAGTTTGGAGTGTGAAGTCCTTAATC
CTCTGGCTCTATTTGAGCAAAAAACGGCGAAAAGAAAGCGCCGTATTGTTGATTGGCACCATTTTTCGGTCGCCGCGGGA
TTAGCGATTGGTGGCATTCAGTGGCTGGAGGATAGCCATGCAGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087I1V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

53.134

100

0.531
  pilM Vibrio cholerae strain A1552

48.974

100

0.499

Multiple sequence alignment