Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FORC54_RS04685 | Genome accession | NZ_CP019121 |
| Coordinates | 982454..982756 (+) | Length | 100 a.a. |
| NCBI ID | WP_038968878.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_054 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 977454..987756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC54_RS04670 (FORC54_0894) | lon | 977468..979819 (+) | 2352 | WP_017420949.1 | endopeptidase La | - |
| FORC54_RS04675 (FORC54_0895) | - | 980013..980285 (+) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| FORC54_RS04680 (FORC54_0896) | ppiD | 980462..982321 (+) | 1860 | WP_101958415.1 | peptidylprolyl isomerase | - |
| FORC54_RS04685 (FORC54_0897) | comEA | 982454..982756 (+) | 303 | WP_038968878.1 | ComEA family DNA-binding protein | Machinery gene |
| FORC54_RS04690 (FORC54_0898) | rrtA | 982803..983363 (-) | 561 | WP_233902451.1 | rhombosortase | - |
| FORC54_RS04695 (FORC54_0899) | - | 983367..983975 (+) | 609 | WP_101958417.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| FORC54_RS04700 (FORC54_0900) | - | 983997..985328 (-) | 1332 | WP_039561952.1 | anti-phage deoxyguanosine triphosphatase | - |
| FORC54_RS04705 (FORC54_0901) | yfbR | 985334..985918 (-) | 585 | WP_017420943.1 | 5'-deoxynucleotidase | - |
| FORC54_RS04710 (FORC54_0902) | - | 986000..987214 (-) | 1215 | WP_017420942.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10931.82 Da Isoelectric Point: 9.6577
>NTDB_id=213322 FORC54_RS04685 WP_038968878.1 982454..982756(+) (comEA) [Vibrio vulnificus strain FORC_054]
MKQVITLLAMLMAFSFPSVSFADSATKAAEKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
VQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAAEKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
VQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=213322 FORC54_RS04685 WP_038968878.1 982454..982756(+) (comEA) [Vibrio vulnificus strain FORC_054]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGAGAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCAACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GTTCAAGTGAAAGGTATCGGTAAGTCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGAGAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCAACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GTTCAAGTGAAAGGTATCGGTAAGTCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
51.02 |
98 |
0.5 |
| comEA | Vibrio cholerae strain A1552 |
51.02 |
98 |
0.5 |