Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVV20_RS17775 Genome accession   NZ_CP019091
Coordinates   3709559..3710617 (-) Length   352 a.a.
NCBI ID   WP_101838579.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain MAI134     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3695420..3743601 3709559..3710617 within 0


Gene organization within MGE regions


Location: 3695420..3743601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVV20_RS17700 (BVV20_17950) - 3696151..3696456 (-) 306 Protein_3230 JAB domain-containing protein -
  BVV20_RS17705 (BVV20_17955) - 3696508..3697524 (+) 1017 WP_082324143.1 IS30 family transposase -
  BVV20_RS17710 (BVV20_17960) - 3697532..3697666 (-) 135 Protein_3232 DNA repair protein RadC -
  BVV20_RS17720 (BVV20_17970) - 3698002..3699759 (-) 1758 WP_024745295.1 BatD family protein -
  BVV20_RS17725 (BVV20_17975) - 3699756..3701570 (-) 1815 WP_101838573.1 VWA domain-containing protein -
  BVV20_RS17730 (BVV20_17980) - 3701567..3702574 (-) 1008 WP_024745293.1 VWA domain-containing protein -
  BVV20_RS17735 (BVV20_17985) - 3702571..3703032 (-) 462 WP_011258002.1 DUF4381 domain-containing protein -
  BVV20_RS17740 (BVV20_17990) - 3703035..3703997 (-) 963 WP_101838574.1 DUF58 domain-containing protein -
  BVV20_RS17745 (BVV20_17995) - 3704018..3705037 (-) 1020 WP_101838575.1 MoxR family ATPase -
  BVV20_RS17755 (BVV20_18005) - 3705613..3707565 (-) 1953 WP_101838576.1 type IV pilus secretin PilQ family protein -
  BVV20_RS17760 (BVV20_18010) - 3707585..3708118 (-) 534 WP_011257996.1 pilus assembly protein PilP -
  BVV20_RS17765 (BVV20_18015) - 3708115..3708780 (-) 666 WP_101838577.1 type 4a pilus biogenesis protein PilO -
  BVV20_RS17770 (BVV20_18020) - 3708777..3709559 (-) 783 WP_101838578.1 PilN domain-containing protein -
  BVV20_RS17775 (BVV20_18025) comM 3709559..3710617 (-) 1059 WP_101838579.1 pilus assembly protein PilM Machinery gene
  BVV20_RS17780 (BVV20_18030) - 3710833..3713262 (+) 2430 WP_101838580.1 penicillin-binding protein 1A -
  BVV20_RS17785 (BVV20_18035) - 3713586..3714236 (+) 651 WP_101838581.1 hypothetical protein -
  BVV20_RS17795 (BVV20_18045) - 3714609..3715898 (-) 1290 WP_024743468.1 citrate synthase -
  BVV20_RS17800 (BVV20_18050) - 3716133..3716375 (-) 243 WP_017156869.1 type B 50S ribosomal protein L31 -
  BVV20_RS17805 (BVV20_18055) - 3716447..3717385 (-) 939 WP_024743469.1 nucleoside hydrolase -
  BVV20_RS17810 (BVV20_18060) recG 3717518..3719671 (-) 2154 WP_101838582.1 ATP-dependent DNA helicase RecG -
  BVV20_RS17815 (BVV20_18065) - 3719692..3720072 (-) 381 WP_101838583.1 RidA family protein -
  BVV20_RS17820 (BVV20_18070) - 3720152..3722323 (-) 2172 WP_024743472.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BVV20_RS17825 (BVV20_18075) rpoZ 3722452..3722751 (-) 300 WP_002812428.1 DNA-directed RNA polymerase subunit omega -
  BVV20_RS17835 (BVV20_18085) gmk 3723020..3723631 (-) 612 WP_024743473.1 guanylate kinase -
  BVV20_RS17840 (BVV20_18090) - 3723747..3724607 (-) 861 WP_024743474.1 YicC/YloC family endoribonuclease -
  BVV20_RS17845 (BVV20_18095) rph 3724717..3725442 (+) 726 WP_024743475.1 ribonuclease PH -
  BVV20_RS17850 (BVV20_18100) - 3725439..3725831 (+) 393 Protein_3256 VOC family protein -
  BVV20_RS17855 (BVV20_18105) rdgB 3725828..3726427 (+) 600 WP_199435617.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  BVV20_RS17860 (BVV20_18110) hemW 3726443..3727600 (+) 1158 WP_024743477.1 radical SAM family heme chaperone HemW -
  BVV20_RS17865 (BVV20_18115) - 3727767..3730187 (+) 2421 WP_024743478.1 DUF1631 domain-containing protein -
  BVV20_RS17870 (BVV20_18120) - 3730184..3730531 (+) 348 WP_024743479.1 PilZ domain-containing protein -
  BVV20_RS17875 (BVV20_18125) pepQ 3730730..3732055 (+) 1326 WP_024743480.1 Xaa-Pro dipeptidase -
  BVV20_RS17885 (BVV20_18135) - 3732358..3732758 (+) 401 Protein_3262 XVIPCD domain-containing protein -
  BVV20_RS17890 (BVV20_18140) - 3732943..3734283 (-) 1341 WP_024743481.1 aminopeptidase P N-terminal domain-containing protein -
  BVV20_RS17895 (BVV20_18145) - 3734294..3734836 (-) 543 WP_011407785.1 YecA family protein -
  BVV20_RS17900 (BVV20_18150) - 3735074..3735295 (+) 222 WP_024743482.1 TIGR02449 family protein -
  BVV20_RS17905 (BVV20_18155) - 3735292..3735591 (+) 300 WP_019300828.1 cell division protein ZapA -
  BVV20_RS17915 (BVV20_18165) - 3736202..3736792 (+) 591 WP_024743483.1 5-formyltetrahydrofolate cyclo-ligase -
  BVV20_RS17920 (BVV20_18170) - 3736789..3737259 (+) 471 WP_024743484.1 EVE domain-containing protein -
  BVV20_RS17925 (BVV20_18175) rpiA 3737351..3737998 (+) 648 WP_101838585.1 ribose-5-phosphate isomerase RpiA -
  BVV20_RS17930 (BVV20_18180) - 3738153..3738602 (+) 450 WP_024743486.1 DUF192 domain-containing protein -
  BVV20_RS17935 (BVV20_18185) - 3738752..3739633 (+) 882 WP_024743487.1 SirB1 family protein -
  BVV20_RS17940 (BVV20_18190) - 3739683..3739922 (-) 240 WP_011257965.1 rubredoxin -
  BVV20_RS17945 (BVV20_18195) thiE 3739946..3740569 (+) 624 WP_024743488.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37624.24 Da        Isoelectric Point: 4.3924

>NTDB_id=213097 BVV20_RS17775 WP_101838579.1 3709559..3710617(-) (comM) [Xanthomonas oryzae pv. oryzae strain MAI134]
MGLLPKSQSPLIGVDISSTAVKILQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=213097 BVV20_RS17775 WP_101838579.1 3709559..3710617(-) (comM) [Xanthomonas oryzae pv. oryzae strain MAI134]
GTGGGGCTTTTACCTAAGAGTCAGTCGCCACTAATTGGTGTCGACATTAGTTCTACTGCCGTGAAGATCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGTGTGGAACATTACGCCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCGGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCTATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTCCTGCTGGCCGCATCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACTACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment