Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS058_RS30080 Genome accession   NZ_CP024477
Coordinates   6305187..6305861 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain 12939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6300187..6310861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS30050 - 6300632..6301966 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  CS058_RS30055 - 6302032..6302394 (+) 363 WP_003096551.1 cupin domain-containing protein -
  CS058_RS30060 rpmG 6302531..6302686 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  CS058_RS30065 rpmB 6302698..6302934 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  CS058_RS30070 - 6303290..6304870 (+) 1581 WP_003096557.1 ABC transporter substrate-binding protein -
  CS058_RS32170 - 6304896..6305126 (+) 231 WP_166740982.1 hypothetical protein -
  CS058_RS30080 radC 6305187..6305861 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  CS058_RS30085 coaBC 6306001..6307209 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CS058_RS30090 dut 6307217..6307672 (+) 456 WP_019372296.1 dUTP diphosphatase -
  CS058_RS30095 - 6307709..6310315 (+) 2607 WP_034026658.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=213003 CS058_RS30080 WP_003096559.1 6305187..6305861(-) (radC) [Pseudomonas aeruginosa strain 12939]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=213003 CS058_RS30080 WP_003096559.1 6305187..6305861(-) (radC) [Pseudomonas aeruginosa strain 12939]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTACGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment