Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVL33_RS02390 Genome accession   NZ_CP019041
Coordinates   498505..499089 (+) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain 65     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 493505..504089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS02370 (BVL33_02370) tenA 493739..494413 (-) 675 WP_004951380.1 thiaminase II -
  BVL33_RS02375 (BVL33_02375) - 494588..495670 (+) 1083 WP_004909842.1 DUF475 domain-containing protein -
  BVL33_RS02380 (BVL33_02380) - 495739..496893 (-) 1155 WP_004738527.1 IS4 family transposase -
  BVL33_RS02385 (BVL33_02385) - 497088..498452 (+) 1365 WP_005403380.1 MFS transporter -
  BVL33_RS02390 (BVL33_02390) ssb 498505..499089 (+) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  BVL33_RS02400 (BVL33_02400) - 499596..501038 (+) 1443 WP_075696012.1 amino acid permease -
  BVL33_RS02405 (BVL33_02405) - 501111..502610 (-) 1500 WP_075696013.1 PLP-dependent aminotransferase family protein -
  BVL33_RS02410 (BVL33_02410) gabT 502765..504057 (+) 1293 WP_004909820.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=212798 BVL33_RS02390 WP_004909838.1 498505..499089(+) (ssb) [Acinetobacter junii strain 65]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=212798 BVL33_RS02390 WP_004909838.1 498505..499089(+) (ssb) [Acinetobacter junii strain 65]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGCCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAATACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCTGCTCCAGCTGA
CTTAGATGATGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392

Multiple sequence alignment