Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AT570_RS04960 Genome accession   NZ_CP019034
Coordinates   1063363..1064103 (-) Length   246 a.a.
NCBI ID   WP_000076102.1    Uniprot ID   A0A1E3MBI9
Organism   Acinetobacter baumannii strain AB042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058363..1069103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT570_RS04940 (AT570_04940) aroB 1058900..1059982 (-) 1083 WP_001193998.1 3-dehydroquinate synthase -
  AT570_RS04945 (AT570_04945) aroK 1060011..1060580 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AT570_RS04950 (AT570_04950) pilQ 1060592..1062757 (-) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  AT570_RS04955 (AT570_04955) pilP 1062825..1063352 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AT570_RS04960 (AT570_04960) pilO 1063363..1064103 (-) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  AT570_RS04965 (AT570_04965) pilN 1064100..1064741 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  AT570_RS04970 (AT570_04970) pilM 1064741..1065799 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AT570_RS04975 (AT570_04975) ponA 1065962..1068517 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27849.61 Da        Isoelectric Point: 4.8357

>NTDB_id=212642 AT570_RS04960 WP_000076102.1 1063363..1064103(-) (pilO) [Acinetobacter baumannii strain AB042]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=212642 AT570_RS04960 WP_000076102.1 1063363..1064103(-) (pilO) [Acinetobacter baumannii strain AB042]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
TATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3MBI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment