Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AT570_RS04965 Genome accession   NZ_CP019034
Coordinates   1064100..1064741 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain AB042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1059100..1069741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT570_RS04945 (AT570_04945) aroK 1060011..1060580 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AT570_RS04950 (AT570_04950) pilQ 1060592..1062757 (-) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  AT570_RS04955 (AT570_04955) pilP 1062825..1063352 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AT570_RS04960 (AT570_04960) pilO 1063363..1064103 (-) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  AT570_RS04965 (AT570_04965) pilN 1064100..1064741 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  AT570_RS04970 (AT570_04970) pilM 1064741..1065799 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AT570_RS04975 (AT570_04975) ponA 1065962..1068517 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AT570_RS04980 (AT570_04980) - 1068535..1069359 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  AT570_RS04985 (AT570_04985) - 1069362..1069694 (-) 333 WP_000169602.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=212643 AT570_RS04965 WP_000201223.1 1064100..1064741(-) (pilN) [Acinetobacter baumannii strain AB042]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=212643 AT570_RS04965 WP_000201223.1 1064100..1064741(-) (pilN) [Acinetobacter baumannii strain AB042]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment