Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVG95_RS18455 Genome accession   NZ_CP018915
Coordinates   3907026..3907559 (-) Length   177 a.a.
NCBI ID   WP_089196300.1    Uniprot ID   -
Organism   Serratia marcescens strain UMH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3902026..3912559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG95_RS18420 (BVG95_18445) - 3902366..3902773 (-) 408 WP_025304432.1 VOC family protein -
  BVG95_RS18425 (BVG95_18450) - 3902821..3903489 (-) 669 WP_089196299.1 glutathione S-transferase family protein -
  BVG95_RS18430 (BVG95_18455) - 3903486..3903929 (-) 444 WP_025304434.1 lipocalin-like domain-containing protein -
  BVG95_RS18435 (BVG95_18460) bhsA 3904125..3904385 (+) 261 WP_025304435.1 multiple stress resistance protein BhsA -
  BVG95_RS18440 (BVG95_18465) - 3904535..3905284 (+) 750 WP_060448018.1 3-oxoacyl-ACP reductase family protein -
  BVG95_RS18445 (BVG95_18470) - 3905550..3905762 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  BVG95_RS18450 (BVG95_18475) - 3905876..3906940 (+) 1065 WP_227255618.1 cyclase family protein -
  BVG95_RS18455 (BVG95_18480) ssb 3907026..3907559 (-) 534 WP_089196300.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BVG95_RS18460 (BVG95_18485) uvrA 3907837..3910665 (+) 2829 WP_025304439.1 excinuclease ABC subunit UvrA -
  BVG95_RS18465 (BVG95_18490) - 3910895..3911947 (+) 1053 WP_089196301.1 NAD(P)-dependent alcohol dehydrogenase -
  BVG95_RS18470 (BVG95_18495) maa 3911979..3912536 (-) 558 WP_089196302.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18838.74 Da        Isoelectric Point: 5.2358

>NTDB_id=211829 BVG95_RS18455 WP_089196300.1 3907026..3907559(-) (ssb) [Serratia marcescens strain UMH1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=211829 BVG95_RS18455 WP_089196300.1 3907026..3907559(-) (ssb) [Serratia marcescens strain UMH1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssb Neisseria meningitidis MC58

46.369

100

0.469

Multiple sequence alignment