Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   BVD86_RS16510 Genome accession   NZ_CP018909
Coordinates   3430994..3431773 (+) Length   259 a.a.
NCBI ID   WP_075383176.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3425994..3436773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16495 (BVD86_16535) ponA 3426575..3429136 (-) 2562 WP_158640833.1 penicillin-binding protein PBP1a -
  BVD86_RS16500 (BVD86_16540) pilM 3429298..3430356 (+) 1059 WP_213064578.1 pilus assembly protein PilM Machinery gene
  BVD86_RS16505 (BVD86_16545) pilN 3430356..3430997 (+) 642 WP_101664427.1 PilN domain-containing protein Machinery gene
  BVD86_RS16510 (BVD86_16550) pilO 3430994..3431773 (+) 780 WP_075383176.1 type 4a pilus biogenesis protein PilO Machinery gene
  BVD86_RS16515 (BVD86_16555) pilP 3431785..3432312 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  BVD86_RS16520 (BVD86_16560) pilQ 3432375..3434540 (+) 2166 WP_101664428.1 type IV pilus secretin PilQ Machinery gene
  BVD86_RS16525 (BVD86_16565) aroK 3434552..3435121 (+) 570 WP_002116987.1 shikimate kinase AroK -
  BVD86_RS16530 (BVD86_16570) aroB 3435150..3436232 (+) 1083 WP_101664429.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29407.49 Da        Isoelectric Point: 5.7424

>NTDB_id=211771 BVD86_RS16510 WP_075383176.1 3430994..3431773(+) (pilO) [Acinetobacter pittii strain XJ88]
MSPDELHDLSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNAHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=211771 BVD86_RS16510 WP_075383176.1 3430994..3431773(+) (pilO) [Acinetobacter pittii strain XJ88]
ATGAGTCCTGATGAACTTCATGATCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAGGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTACAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTAATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGCACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

71.983

89.575

0.645

Multiple sequence alignment