Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BVD86_RS16520 Genome accession   NZ_CP018909
Coordinates   3432375..3434540 (+) Length   721 a.a.
NCBI ID   WP_101664428.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427375..3439540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16500 (BVD86_16540) pilM 3429298..3430356 (+) 1059 WP_213064578.1 pilus assembly protein PilM Machinery gene
  BVD86_RS16505 (BVD86_16545) pilN 3430356..3430997 (+) 642 WP_101664427.1 PilN domain-containing protein Machinery gene
  BVD86_RS16510 (BVD86_16550) pilO 3430994..3431773 (+) 780 WP_075383176.1 type 4a pilus biogenesis protein PilO Machinery gene
  BVD86_RS16515 (BVD86_16555) pilP 3431785..3432312 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  BVD86_RS16520 (BVD86_16560) pilQ 3432375..3434540 (+) 2166 WP_101664428.1 type IV pilus secretin PilQ Machinery gene
  BVD86_RS16525 (BVD86_16565) aroK 3434552..3435121 (+) 570 WP_002116987.1 shikimate kinase AroK -
  BVD86_RS16530 (BVD86_16570) aroB 3435150..3436232 (+) 1083 WP_101664429.1 3-dehydroquinate synthase -
  BVD86_RS16535 (BVD86_16575) - 3436249..3437118 (+) 870 WP_101664430.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78131.59 Da        Isoelectric Point: 6.5413

>NTDB_id=211773 BVD86_RS16520 WP_101664428.1 3432375..3434540(+) (pilQ) [Acinetobacter pittii strain XJ88]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPHYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMSLITQGSNNSNGMQRTSDGGNSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVSGAAPN
GELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=211773 BVD86_RS16520 WP_101664428.1 3432375..3434540(+) (pilQ) [Acinetobacter pittii strain XJ88]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCCTATCAGCTTGAGAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTCAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
AGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACCTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTACACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCGACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACAATT
AGTTTAAAACGTCCGCAGGACAAAAATGTAACCTCTTTATACAAGACACCTCATTATTCTGGTAATAAGCTGTCTCTTGA
TTTTCAAGATATTGAAGTCCGTCGAGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TTCAAGGTAATATCACTTTGCGCTTAAAAGATGTTCCATGGGACCAAGCGCTTGATATTATTTTAAAAACTAAAAATCTA
GATAAACGAAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAGGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGCAATGGTATGCAGCGCACATCTGATGGTGGAAATTCTACATCTACTAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACCAAAGAGCTCGGTGTTAAATGGGGTATATTA
TCGCAAGGGATCACTAACAATAATAATTTGTTAGTTGGTGGTAGTGAAACGACCTTGTGGAATTTACGAGAGCCCAAAAA
GGATGAGACTACGGGTGGTTATAAATACACGATTGAACGTCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGG
CTGGGAGTATTGCCTTTGGCTTGATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAAGCTGATGGC
TATGGTGAGGTTATTTCTACCCCTAAAGTAATGACTGCAGATAAACAGCCTGCAAAAGTTGCAACAGGTCAACAGGTCCC
ATATCAAACTACAACTAATTCTGCTGCTGGTGCTACAGCAAGTACCTCTTTTAAAGATGCACTATTAAGCCTAGATGTTA
CCCCGAGCATTACGCCTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAGGATTCGGTTTCGGGTGCGGCTCCTAAT
GGTGAATTGATCCTAAATAAAAATAATATCAAGACAAATGTGTTGGTAAATAATGGTGAGACAGTCATTTTAGGAGGGGT
GTTTGAGCAGACAACCCTTAACTCTCAAACCAAAGTTCCTTTCTTTGGGGATTTACCGGGAATTGGACGCCTATTTAGGA
AAGATCAGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

AMIN domain (AMIN)

(40-118)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

92.094

100

0.921
  pilQ Acinetobacter baumannii strain A118

91.956

100

0.92
  comQ Acinetobacter baylyi ADP1

74.965

100

0.752
  pilQ Pseudomonas aeruginosa PAK

39.636

99.029

0.393

Multiple sequence alignment