Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BVD86_RS16505 Genome accession   NZ_CP018909
Coordinates   3430356..3430997 (+) Length   213 a.a.
NCBI ID   WP_101664427.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3425356..3435997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16485 (BVD86_16525) - 3425400..3425732 (+) 333 WP_002116981.1 DUF7709 family protein -
  BVD86_RS16490 (BVD86_16530) rrmA 3425735..3426559 (+) 825 WP_101664425.1 putative RNA methyltransferase -
  BVD86_RS16495 (BVD86_16535) ponA 3426575..3429136 (-) 2562 WP_158640833.1 penicillin-binding protein PBP1a -
  BVD86_RS16500 (BVD86_16540) pilM 3429298..3430356 (+) 1059 WP_213064578.1 pilus assembly protein PilM Machinery gene
  BVD86_RS16505 (BVD86_16545) pilN 3430356..3430997 (+) 642 WP_101664427.1 PilN domain-containing protein Machinery gene
  BVD86_RS16510 (BVD86_16550) pilO 3430994..3431773 (+) 780 WP_075383176.1 type 4a pilus biogenesis protein PilO Machinery gene
  BVD86_RS16515 (BVD86_16555) pilP 3431785..3432312 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  BVD86_RS16520 (BVD86_16560) pilQ 3432375..3434540 (+) 2166 WP_101664428.1 type IV pilus secretin PilQ Machinery gene
  BVD86_RS16525 (BVD86_16565) aroK 3434552..3435121 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23849.29 Da        Isoelectric Point: 6.4518

>NTDB_id=211770 BVD86_RS16505 WP_101664427.1 3430356..3430997(+) (pilN) [Acinetobacter pittii strain XJ88]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVSVDVGEMGVTTTDDTANTSVGTDKGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=211770 BVD86_RS16505 WP_101664427.1 3430356..3430997(+) (pilN) [Acinetobacter pittii strain XJ88]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGCTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTAGTGT
TGATGTAGGGGAAATGGGGGTGACCACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGGGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

72.059

95.775

0.69

Multiple sequence alignment