Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVD86_RS15975 Genome accession   NZ_CP018909
Coordinates   3334415..3335002 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain XJ88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3329415..3340002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS15950 (BVD86_16000) - 3329491..3330291 (-) 801 WP_068929810.1 SDR family NAD(P)-dependent oxidoreductase -
  BVD86_RS15955 (BVD86_16005) - 3330395..3330766 (-) 372 WP_068929809.1 MerR family transcriptional regulator -
  BVD86_RS15960 (BVD86_16010) tenA 3330833..3331507 (-) 675 WP_005066884.1 thiaminase II -
  BVD86_RS15965 (BVD86_16015) - 3331770..3332852 (+) 1083 WP_101664379.1 DUF475 domain-containing protein -
  BVD86_RS15970 (BVD86_16020) yajR 3332999..3334363 (+) 1365 WP_101664380.1 MFS transporter -
  BVD86_RS15975 (BVD86_16025) ssb 3334415..3335002 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  BVD86_RS15980 (BVD86_16030) - 3335043..3335366 (-) 324 WP_101664381.1 AzlD domain-containing protein -
  BVD86_RS15985 (BVD86_16035) - 3335363..3336058 (-) 696 WP_005066893.1 AzlC family ABC transporter permease -
  BVD86_RS15990 (BVD86_16040) ydcN 3336127..3336675 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  BVD86_RS15995 (BVD86_16045) - 3336981..3338423 (+) 1443 WP_039764921.1 amino acid permease -
  BVD86_RS16000 (BVD86_16050) - 3338489..3339988 (-) 1500 WP_025469774.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=211768 BVD86_RS15975 WP_005804461.1 3334415..3335002(+) (ssb) [Acinetobacter pittii strain XJ88]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=211768 BVD86_RS15975 WP_005804461.1 3334415..3335002(+) (ssb) [Acinetobacter pittii strain XJ88]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCAACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment