Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CNZ63_RS08965 Genome accession   NZ_CP024232
Coordinates   1707409..1707945 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O6:H16 strain 2014EL-1346-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1702409..1712945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZ63_RS08940 soxR 1704137..1704601 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  CNZ63_RS08945 soxS 1704687..1705010 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  CNZ63_RS08950 pdeC 1705013..1706599 (-) 1587 WP_000019532.1 c-di-GMP phosphodiesterase PdeC -
  CNZ63_RS08960 yjcB 1707029..1707310 (+) 282 WP_001295689.1 YjcB family protein -
  CNZ63_RS08965 ssb 1707409..1707945 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CNZ63_RS08970 uvrA 1708199..1711021 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  CNZ63_RS08975 yjbR 1711056..1711412 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  CNZ63_RS08980 yjbQ 1711416..1711832 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CNZ63_RS08985 aphA 1711943..1712656 (-) 714 WP_001355615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=211689 CNZ63_RS08965 WP_000168305.1 1707409..1707945(-) (ssb) [Escherichia coli O6:H16 strain 2014EL-1346-6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=211689 CNZ63_RS08965 WP_000168305.1 1707409..1707945(-) (ssb) [Escherichia coli O6:H16 strain 2014EL-1346-6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment