Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   XF_RS01570 Genome accession   NC_002488
Coordinates   381604..383496 (+) Length   630 a.a.
NCBI ID   WP_171817040.1    Uniprot ID   -
Organism   Xylella fastidiosa 9a5c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376604..388496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS01550 (XF0369) pilM 378668..379726 (+) 1059 WP_038200243.1 type IV pilus biogenesis protein PilM Machinery gene
  XF_RS01555 (XF0370) - 379726..380286 (+) 561 Protein_288 PilN domain-containing protein -
  XF_RS01560 (XF0371) - 380388..381056 (+) 669 WP_010892902.1 type 4a pilus biogenesis protein PilO -
  XF_RS01565 (XF0372) - 381053..381583 (+) 531 WP_010892903.1 pilus assembly protein PilP -
  XF_RS01570 (XF0373) comQ/pilQ 381604..383496 (+) 1893 WP_171817040.1 type IV pilus secretin PilQ Machinery gene
  XF_RS01575 (XF0374) - 384873..385631 (+) 759 WP_031336237.1 phosphatase PAP2 family protein -
  XF_RS01580 (XF0375) - 385667..387286 (+) 1620 WP_229716583.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 630 a.a.        Molecular weight: 68070.94 Da        Isoelectric Point: 8.6919

>NTDB_id=21101 XF_RS01570 WP_171817040.1 381604..383496(+) (comQ/pilQ) [Xylella fastidiosa 9a5c]
MMTLFEVLGLRFFRRIASVRVCAIWVCMAFAWCCIVGTVSAENKQAIPVPKVANAPLSVSKIDFKRGDDGSGRLILKFDG
QGATPDLRTQGGTVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEYVVEIVPR
KGEAAMGGAITPESVSKSAAKISAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINVPWDQALD
IVLRAKGLDKRRDEKVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGGGNGTPNN
NSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDN
TATIGSHVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGY
IKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLNKREINTA
VLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1893 bp        

>NTDB_id=21101 XF_RS01570 WP_171817040.1 381604..383496(+) (comQ/pilQ) [Xylella fastidiosa 9a5c]
ATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTTTTAGGCGTATAGCCTCGGTCCGCGTATGTGCAATTTGGGTATG
CATGGCTTTCGCTTGGTGTTGCATCGTAGGAACGGTGTCGGCTGAAAACAAGCAAGCGATTCCAGTGCCTAAAGTTGCCA
ATGCGCCACTAAGCGTTTCCAAGATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGTCTGATTTTGAAGTTTGATGGG
CAGGGAGCCACTCCTGACCTGCGTACGCAGGGTGGCACCGTGCTGGTTGACCTGGGGACAGCTGTGTTGCCGACTGTCTT
GCAACGCCAGATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGCCTATGGGTAAGGGTGCACAAC
TTGTGTTGAGCACAAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATACGTGGTTGAAATTGTGCCACGC
AAGGGAGAGGCTGCCATGGGTGGGGCGATCACCCCAGAATCGGTCAGTAAGTCCGCAGCGAAGATTTCCGCACAAGGGTA
CAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGTTGATCGCTGATGAGTCCAATC
TCAATATTGTTGCTTCCGACACTGTGCAAGGCAATGTCACTCTACGTTTGATTAATGTGCCATGGGATCAAGCGCTCGAC
ATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAAAGTAATTTGGGTTGCGCCGCAACAGGAGCTTGCTAA
ATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATTGAAAATCGTGAGGGGTTAATTACCGATTATGTCCAAATAAATT
ATCATTCGGCCACGGTCATTTTTAAGGCACTGACAGAAGCCAAAGGTATGGGTGGGGGGGGTAACGGTACACCTAATAAT
AATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTAGCTGATGAGCGCACTAATACGTTGATGATTAGCGATAT
TCCGAAGAAAGTCGCGCAAATGCGTACTCTCATCCAGCATATTGATCGTCCTGTGGACCAAGTGTTGATTGAGGGCCGCA
TCGTGATCGCTACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTTGGTGTTGGTGCTGCTAGCCGTTTCAGCGATAAC
ACTGCAACGATCGGTAGTCACGTCACTACTGCTGATAGCTCTACATCGGCTACGCGGGGGCTTAATGTTGACTTGGGCGG
TCCGACCAACACCACTGCTTCAGTTCTCCCGAGTTTAGCCTACACTTTGCTTGGACCTAAATTTAATCTAGATCTTGAGC
TTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCCCGTATCGTCACTGCAAACCAGCGTGAGGGATAT
ATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGGTCAAGCCACTCCGAATGTCCAATT
TAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCCAACGATCACCAATGACAACCGTGTGTTTCTCAACATGACTGTCAAAA
AGGACGAGATTGATCAAATGATTACGATCGCCAATTTCGGTACCGTGCCGACCTTGAACAAGCGTGAGATCAACACTGCC
GTATTGGTTGATGATGGTCAAACTGTTGTTATCGGTGGTGTATATGAGTTTTCCGACCGTAATAGTGTGAGTAAGGTTCC
GTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAACAAAAGGCCGAGCTTTTGATTT
TCGTGACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCAGTGCATTGA

Domains

Predicted by InterProScan.

Secretin and TonB N terminus short domain (STN)

(215-261)

Bacterial type II and III secretion system protein (Secretin)

(456-621)

Bacterial type II/III secretion system short domain (Secretin_N)

(289-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

40.067

94.286

0.378
  pilQ Acinetobacter baumannii D1279779

37.705

96.825

0.365
  pilQ Acinetobacter baumannii strain A118

37.705

96.825

0.365
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.686

96.032

0.362
  pilQ Vibrio cholerae strain A1552

37.686

96.032

0.362

Multiple sequence alignment