Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUQ73_RS01155 Genome accession   NZ_CP018846
Coordinates   242879..243421 (+) Length   180 a.a.
NCBI ID   WP_027917840.1    Uniprot ID   A0A1X7E6N8
Organism   Pseudomonas putida strain AA7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 237879..248421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ73_RS01140 bfr 237974..238438 (+) 465 WP_003257116.1 bacterioferritin -
  BUQ73_RS01145 uvrA 238511..241345 (-) 2835 WP_079226349.1 excinuclease ABC subunit UvrA -
  BUQ73_RS01150 - 241475..242869 (+) 1395 WP_079226350.1 MFS transporter -
  BUQ73_RS01155 ssb 242879..243421 (+) 543 WP_027917840.1 single-stranded DNA-binding protein Machinery gene
  BUQ73_RS01165 fdnG 244016..247084 (+) 3069 WP_152031493.1 formate dehydrogenase-N subunit alpha -
  BUQ73_RS01170 fdxH 247084..248034 (+) 951 WP_079226352.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19979.03 Da        Isoelectric Point: 5.9286

>NTDB_id=210969 BUQ73_RS01155 WP_027917840.1 242879..243421(+) (ssb) [Pseudomonas putida strain AA7]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGGDQYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQQQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=210969 BUQ73_RS01155 WP_027917840.1 242879..243421(+) (ssb) [Pseudomonas putida strain AA7]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGGGCCAGCAAGGCGGCGGCGATCAGTACAATCAGGGTGGCGGCAACTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCTCCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAGCAACAGCGTCCGGCGCCG
CAGCAGCCAGCACCGCAGCCGGCGGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7E6N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.572
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.506
  ssb Neisseria gonorrhoeae MS11

47.541

100

0.483
  ssb Neisseria meningitidis MC58

47.027

100

0.483

Multiple sequence alignment