Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CR537_RS06440 Genome accession   NZ_CP024138
Coordinates   1252560..1253297 (-) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC020     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1247560..1258297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR537_RS06410 (CR537_06425) tyrA 1247933..1249054 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CR537_RS06415 (CR537_06430) pheA 1249097..1250257 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  CR537_RS06420 pheL 1250356..1250403 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CR537_RS06425 (CR537_06435) raiA 1250507..1250848 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CR537_RS06435 (CR537_06445) insG 1251109..1252456 (-) 1348 Protein_1187 IS4-like element IS4 family transposase -
  CR537_RS06440 (CR537_06450) comL 1252560..1253297 (-) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  CR537_RS06445 (CR537_06455) rluD 1253432..1254412 (+) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CR537_RS06450 (CR537_06460) yfiH 1254409..1255140 (+) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  CR537_RS06455 (CR537_06465) clpC 1255270..1257843 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=210969 CR537_RS06440 WP_000197684.1 1252560..1253297(-) (comL) [Escherichia coli strain 14EC020]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=210969 CR537_RS06440 WP_000197684.1 1252560..1253297(-) (comL) [Escherichia coli strain 14EC020]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384

Multiple sequence alignment