Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUQ72_RS20345 Genome accession   NZ_CP018845
Coordinates   4573468..4573998 (+) Length   176 a.a.
NCBI ID   WP_079218202.1    Uniprot ID   -
Organism   Herbaspirillum robiniae strain AA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4568468..4578998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ72_RS20335 - 4569982..4571649 (-) 1668 WP_237772430.1 ArnT family glycosyltransferase -
  BUQ72_RS24625 - 4571630..4571950 (+) 321 WP_237772431.1 hypothetical protein -
  BUQ72_RS20340 - 4572196..4573449 (+) 1254 WP_079218201.1 MFS transporter -
  BUQ72_RS20345 ssb 4573468..4573998 (+) 531 WP_079218202.1 single-stranded DNA-binding protein Machinery gene
  BUQ72_RS20350 - 4574095..4576518 (-) 2424 WP_079218203.1 TonB-dependent siderophore receptor -
  BUQ72_RS20355 - 4576618..4577628 (-) 1011 WP_079218204.1 FecR family protein -
  BUQ72_RS20360 - 4577625..4578131 (-) 507 WP_079218205.1 sigma-70 family RNA polymerase sigma factor -
  BUQ72_RS20365 - 4578353..4578814 (-) 462 WP_079218206.1 DUF1810 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18563.49 Da        Isoelectric Point: 7.0175

>NTDB_id=210966 BUQ72_RS20345 WP_079218202.1 4573468..4573998(+) (ssb) [Herbaspirillum robiniae strain AA6]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYVEG
RLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGSMDEGSYGGGGGGGYGGGAPRQNAGGGGGGGMGGGGGAPRQQ
PAQRPASNFEDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=210966 BUQ72_RS20345 WP_079218202.1 4573468..4573998(+) (ssb) [Herbaspirillum robiniae strain AA6]
ATGGCATCGGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGATCCGGAAACGCGCTATATGCCGAACGGCGAAGC
CGTCACCAACATCGCCGTCGCCACGACCGAAAGCTGGAAAGACAAGAACAGCGGCGAGAAGAAAGAGCTCACCGAGTGGC
ACCGCATCACCTTCTACCGCAAGCTGGCTGAAATCGCCGGTCAGTACCTGAAGAAGGGCTCGCAGATCTACGTCGAAGGC
CGCCTGCAGACCCGCAAGTGGCAAGACAAGGAAGGCGTCGAGCGCTACACCACCGAAATCATCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCGGCGGTGGCGGCGGCTCGATGGACGAAGGCAGCTACGGCGGTGGCGGCGGCGGCGGTTACG
GCGGCGGCGCGCCGCGCCAGAATGCCGGCGGCGGTGGTGGTGGCGGCATGGGCGGTGGCGGCGGTGCTCCGCGCCAGCAG
CCGGCCCAGCGCCCGGCTTCCAATTTCGAGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.723

100

0.574
  ssb Vibrio cholerae strain A1552

51.596

100

0.551
  ssb Neisseria gonorrhoeae MS11

51.705

100

0.517
  ssb Neisseria meningitidis MC58

51.136

100

0.511

Multiple sequence alignment