Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Cj1071 Genome accession   NC_002163
Coordinates   1005538..1006089 (+) Length   183 a.a.
NCBI ID   YP_002344464.1    Uniprot ID   O69302
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1000538..1011089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1063 - 1000729..1001154 (+) 426 YP_002344458.1 acetyltransferase -
  Cj1066 rdxA 1001837..1002442 (+) 606 YP_002344459.1 nitroreductase -
  Cj1067 pgsA 1002567..1003103 (+) 537 YP_002344460.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Cj1068 - 1003100..1004206 (+) 1107 YP_002344461.1 zinc metalloprotease -
  Cj1069 - 1004199..1005065 (+) 867 YP_002344462.1 hypothetical protein -
  Cj1070 rpsF 1005152..1005529 (+) 378 YP_002344463.1 30S ribosomal protein S6 -
  Cj1071 ssb 1005538..1006089 (+) 552 YP_002344464.1 single-stranded DNA-binding protein Machinery gene
  Cj1072 rpsR 1006100..1006360 (+) 261 YP_002344465.1 30S ribosomal protein S18 -
  Cj1073c lon 1006421..1008796 (-) 2376 YP_002344466.1 ATP-dependent protease La -
  Cj1074c - 1008813..1009460 (-) 648 YP_002344467.1 lipoprotein -
  Cj1075 - 1009621..1010010 (+) 390 YP_002344468.1 flagellar assembly protein FliW -
  Cj1076 proC 1010010..1010741 (+) 732 YP_002344469.1 pyrroline-5-carboxylate reductase Machinery gene
  Cj1077 ctsT 1010738..1011040 (+) 303 YP_002344470.1 periplasmic protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=21072 Cj1071 YP_002344464.1 1005538..1006089(+) (ssb) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=21072 Cj1071 YP_002344464.1 1005538..1006089(+) (ssb) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment