Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BRX40_RS04115 Genome accession   NZ_CP018820
Coordinates   824681..825244 (+) Length   187 a.a.
NCBI ID   WP_075150757.1    Uniprot ID   A0A1L6J707
Organism   Sphingomonas koreensis strain ABOJV     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 819681..830244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRX40_RS04095 (BRX40_04095) - 820693..822270 (-) 1578 WP_075150753.1 lysine--tRNA ligase -
  BRX40_RS04100 (BRX40_04100) - 822383..822631 (+) 249 WP_100362749.1 FeoA family protein -
  BRX40_RS04105 (BRX40_04105) feoB 822628..824472 (+) 1845 WP_075150755.1 ferrous iron transporter B -
  BRX40_RS04110 (BRX40_04110) - 824469..824642 (-) 174 WP_075150756.1 DUF4169 family protein -
  BRX40_RS04115 (BRX40_04115) ssb 824681..825244 (+) 564 WP_075150757.1 single-stranded DNA-binding protein Machinery gene
  BRX40_RS04120 (BRX40_04120) - 825262..826800 (-) 1539 WP_075150758.1 tryptophan halogenase family protein -
  BRX40_RS04130 (BRX40_04130) - 827337..828695 (+) 1359 WP_075150759.1 MATE family efflux transporter -
  BRX40_RS04135 (BRX40_04135) - 828667..829365 (-) 699 WP_066572762.1 zinc-ribbon domain-containing protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19252.87 Da        Isoelectric Point: 5.0492

>NTDB_id=210594 BRX40_RS04115 WP_075150757.1 824681..825244(+) (ssb) [Sphingomonas koreensis strain ABOJV]
MAGSVNKVILVGNLGRDPESRSFSNGGKVVELRVATSETWKDRNSGERKERTEWHTVKLFSEGLANVAERYLRKGSKVYL
EGQLQTRKWQDQSGADRYSTEIVLQGFDAKLVMLDGPGGGQGGGGMGGGGGSRDDWGGGNDDFAGQSSSRSGGSSGGGYG
GGGGRGGSGGAPAGGGFPDDLDDDVPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=210594 BRX40_RS04115 WP_075150757.1 824681..825244(+) (ssb) [Sphingomonas koreensis strain ABOJV]
ATGGCGGGCAGCGTCAACAAGGTGATCCTGGTCGGCAATCTCGGGCGCGATCCCGAAAGCCGGTCCTTCTCGAATGGCGG
CAAGGTGGTCGAACTGCGCGTCGCCACGTCCGAGACGTGGAAGGATCGCAACTCGGGCGAGCGCAAGGAGCGCACCGAGT
GGCACACGGTGAAGCTCTTTTCCGAAGGCCTCGCCAATGTCGCCGAGCGCTATCTGCGCAAGGGTTCGAAAGTCTATCTC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGTCGGGTGCCGACCGCTATTCGACCGAGATCGTGCTGCAGGGCTT
CGACGCCAAGCTGGTGATGCTCGACGGACCCGGCGGCGGCCAGGGTGGCGGCGGCATGGGCGGCGGTGGCGGCTCGCGCG
ACGACTGGGGCGGCGGCAATGACGACTTCGCCGGTCAGTCGAGCAGCCGTAGCGGCGGTTCCTCGGGCGGCGGCTATGGC
GGCGGCGGCGGTCGCGGCGGCAGCGGCGGCGCGCCTGCCGGCGGCGGCTTCCCCGACGATCTCGACGACGACGTGCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6J707

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.396

100

0.487
  ssb Vibrio cholerae strain A1552

46.809

100

0.471
  ssb Neisseria gonorrhoeae MS11

39.037

100

0.39
  ssb Neisseria meningitidis MC58

39.13

98.396

0.385

Multiple sequence alignment