Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUE77_RS04900 Genome accession   NZ_CP018809
Coordinates   999457..999912 (-) Length   151 a.a.
NCBI ID   WP_075362520.1    Uniprot ID   -
Organism   Lactobacillus jensenii strain SNUV360     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 994457..1004912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUE77_RS04860 (BUE77_04860) - 996123..996440 (-) 318 WP_233263531.1 hypothetical protein -
  BUE77_RS04865 (BUE77_04865) - 996433..996906 (-) 474 WP_015995127.1 ArpU family phage packaging/lysis transcriptional regulator -
  BUE77_RS04870 (BUE77_04870) - 996910..997119 (-) 210 WP_015995126.1 hypothetical protein -
  BUE77_RS04875 (BUE77_04875) - 997103..997345 (-) 243 WP_075362472.1 hypothetical protein -
  BUE77_RS04880 (BUE77_04880) - 997335..998117 (-) 783 WP_015995124.1 hypothetical protein -
  BUE77_RS04885 (BUE77_04885) - 998125..998436 (-) 312 WP_015995123.1 hypothetical protein -
  BUE77_RS04890 (BUE77_04890) - 998433..998852 (-) 420 WP_048597949.1 RusA family crossover junction endodeoxyribonuclease -
  BUE77_RS04895 (BUE77_04895) - 998842..999447 (-) 606 WP_075362473.1 hypothetical protein -
  BUE77_RS04900 (BUE77_04900) ssb 999457..999912 (-) 456 WP_075362520.1 single-stranded DNA-binding protein Machinery gene
  BUE77_RS04905 (BUE77_04905) - 999927..1000733 (-) 807 WP_075362474.1 ATP-binding protein -
  BUE77_RS04910 (BUE77_04910) - 1000717..1001157 (-) 441 WP_208856176.1 hypothetical protein -
  BUE77_RS04915 (BUE77_04915) - 1001154..1001903 (-) 750 WP_075362475.1 conserved phage C-terminal domain-containing protein -
  BUE77_RS04920 (BUE77_04920) - 1002012..1002221 (-) 210 WP_075362476.1 hypothetical protein -
  BUE77_RS04925 (BUE77_04925) - 1002239..1002571 (-) 333 WP_048597938.1 DUF771 domain-containing protein -
  BUE77_RS04930 (BUE77_04930) - 1002574..1003098 (-) 525 WP_048597937.1 hypothetical protein -
  BUE77_RS04935 (BUE77_04935) - 1003091..1003417 (-) 327 WP_048597935.1 hypothetical protein -
  BUE77_RS04940 (BUE77_04940) - 1003599..1003811 (+) 213 WP_048597933.1 hypothetical protein -
  BUE77_RS04945 (BUE77_04945) - 1003849..1004103 (-) 255 WP_048597931.1 hypothetical protein -
  BUE77_RS08420 - 1004143..1004274 (-) 132 WP_261373559.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16842.81 Da        Isoelectric Point: 5.2387

>NTDB_id=210525 BUE77_RS04900 WP_075362520.1 999457..999912(-) (ssb) [Lactobacillus jensenii strain SNUV360]
MINRVVLVGRLTKDINLRKTQSGISVGLFTLAVNRQYSKDKEHKEADFVSCIIWRKGAEILSQYTHKGSRIGIDGRIQTR
NYEDKNGQRVYVTEVVVDNFELLDSKPEQATTSAPVAQTQTTTQAQPAQQTPDPFADGGDTIDISDDDLPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=210525 BUE77_RS04900 WP_075362520.1 999457..999912(-) (ssb) [Lactobacillus jensenii strain SNUV360]
GTGATTAATAGAGTAGTTTTAGTTGGTCGATTAACCAAAGACATTAATTTGAGAAAAACACAGAGTGGAATTTCAGTCGG
ACTCTTTACTTTGGCAGTAAACAGACAGTACAGCAAAGACAAAGAACACAAAGAGGCGGACTTTGTCAGCTGTATTATCT
GGCGTAAGGGTGCTGAAATCTTATCACAGTACACTCACAAGGGTTCAAGGATTGGGATTGATGGTCGTATCCAAACCAGA
AATTACGAAGACAAGAATGGCCAAAGAGTTTATGTGACTGAAGTTGTTGTAGATAACTTTGAACTTTTGGACAGCAAGCC
AGAACAAGCTACTACAAGCGCACCTGTTGCTCAGACTCAGACCACAACGCAAGCACAACCTGCTCAACAAACTCCAGATC
CATTTGCAGATGGTGGAGACACAATTGATATCAGTGACGATGATTTGCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

51.724

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.023

100

0.49
  ssb Vibrio cholerae strain A1552

32.184

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.376

72.185

0.371

Multiple sequence alignment