Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BTV22_RS03360 Genome accession   NZ_CP018807
Coordinates   742041..742505 (-) Length   154 a.a.
NCBI ID   WP_011609284.1    Uniprot ID   A0A9Q6Z0H2
Organism   Histophilus somni strain USDA-ARS-USMARC-63373     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 737041..747505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV22_RS03330 (BTV22_03325) focA 737451..738302 (-) 852 WP_075293712.1 formate transporter FocA -
  BTV22_RS03335 (BTV22_03330) hinT 738547..738897 (+) 351 WP_075293713.1 purine nucleoside phosphoramidase -
  BTV22_RS03340 (BTV22_03335) - 738897..739253 (+) 357 WP_075293714.1 YcfL family protein -
  BTV22_RS03345 (BTV22_03340) nagZ 739260..740315 (+) 1056 WP_075293715.1 beta-N-acetylhexosaminidase -
  BTV22_RS03350 (BTV22_03345) - 740335..740853 (+) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  BTV22_RS03355 (BTV22_03350) metF 741069..741954 (+) 886 Protein_642 methylenetetrahydrofolate reductase -
  BTV22_RS03360 (BTV22_03355) ssb 742041..742505 (-) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  BTV22_RS03365 (BTV22_03360) uvrA 742684..745515 (+) 2832 WP_087449197.1 excinuclease ABC subunit UvrA -
  BTV22_RS03370 (BTV22_03365) - 745687..746742 (+) 1056 WP_011609282.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17419.34 Da        Isoelectric Point: 5.7904

>NTDB_id=210469 BTV22_RS03360 WP_011609284.1 742041..742505(-) (ssb) [Histophilus somni strain USDA-ARS-USMARC-63373]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=210469 BTV22_RS03360 WP_011609284.1 742041..742505(-) (ssb) [Histophilus somni strain USDA-ARS-USMARC-63373]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.536

100

0.747
  ssb Vibrio cholerae strain A1552

52.247

100

0.604
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5

Multiple sequence alignment