Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BTV20_RS06690 Genome accession   NZ_CP018805
Coordinates   1440224..1440688 (+) Length   154 a.a.
NCBI ID   WP_011609284.1    Uniprot ID   A0A9Q6Z0H2
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1435224..1445688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS06680 (BTV20_06665) - 1435987..1437042 (-) 1056 WP_011609282.1 rod shape-determining protein -
  BTV20_RS06685 (BTV20_06670) uvrA 1437214..1440045 (-) 2832 WP_075293717.1 excinuclease ABC subunit UvrA -
  BTV20_RS06690 (BTV20_06675) ssb 1440224..1440688 (+) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  BTV20_RS06695 (BTV20_06680) metF 1440775..1441660 (-) 886 Protein_1311 methylenetetrahydrofolate reductase -
  BTV20_RS06700 (BTV20_06685) - 1441876..1442394 (-) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  BTV20_RS06705 (BTV20_06690) nagZ 1442414..1443469 (-) 1056 WP_075293715.1 beta-N-acetylhexosaminidase -
  BTV20_RS06710 (BTV20_06695) - 1443476..1443832 (-) 357 WP_075293714.1 YcfL family protein -
  BTV20_RS06715 (BTV20_06700) hinT 1443832..1444182 (-) 351 WP_075293713.1 purine nucleoside phosphoramidase -
  BTV20_RS06720 (BTV20_06705) focA 1444427..1445278 (+) 852 WP_075293712.1 formate transporter FocA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17419.34 Da        Isoelectric Point: 5.7904

>NTDB_id=210432 BTV20_RS06690 WP_011609284.1 1440224..1440688(+) (ssb) [Histophilus somni strain USDA-ARS-USMARC-63369]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=210432 BTV20_RS06690 WP_011609284.1 1440224..1440688(+) (ssb) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.536

100

0.747
  ssb Vibrio cholerae strain A1552

52.247

100

0.604
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5

Multiple sequence alignment