Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSUIS_RS03895 Genome accession   NZ_CP018789
Coordinates   766026..766790 (+) Length   254 a.a.
NCBI ID   WP_086297236.1    Uniprot ID   A0A1X9SWK2
Organism   Campylobacter porcelli strain RM6137     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 761026..771790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUIS_RS03875 (CSUIS_0774) - 761191..763113 (-) 1923 WP_086297226.1 RNB domain-containing ribonuclease -
  CSUIS_RS03880 (CSUIS_0775) - 763110..763922 (-) 813 WP_086297228.1 HDOD domain-containing protein -
  CSUIS_RS03885 (CSUIS_0776) ilvC 764066..765088 (+) 1023 WP_086297231.1 ketol-acid reductoisomerase -
  CSUIS_RS03890 (CSUIS_0777) - 765089..766042 (+) 954 WP_086297233.1 divergent polysaccharide deacetylase family protein -
  CSUIS_RS03895 (CSUIS_0778) dprA 766026..766790 (+) 765 WP_086297236.1 DNA-processing protein DprA Machinery gene
  CSUIS_RS03900 (CSUIS_0779) dprB 766787..767158 (+) 372 WP_086297238.1 Holliday junction resolvase RuvX Machinery gene
  CSUIS_RS03905 (CSUIS_0780) - 767155..768021 (+) 867 WP_086297240.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CSUIS_RS03910 (CSUIS_0781) purU 768112..768945 (+) 834 WP_192940222.1 formyltetrahydrofolate deformylase -
  CSUIS_RS03915 (CSUIS_0782) - 768945..769433 (+) 489 WP_086297244.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CSUIS_RS03920 (CSUIS_0783) - 769421..770710 (+) 1290 WP_086297245.1 endonuclease/exonuclease/phosphatase family protein -
  CSUIS_RS03925 (CSUIS_0784) - 770703..770888 (+) 186 WP_086236760.1 hypothetical protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28097.17 Da        Isoelectric Point: 5.8361

>NTDB_id=210231 CSUIS_RS03895 WP_086297236.1 766026..766790(+) (dprA) [Campylobacter porcelli strain RM6137]
MSFITEFKLNSNFQNPPKKLYYKGNLKLLDYPKVAIVGSRRCSSYTKNMTINLASTLKKYGVCVVSGAAIGVDICAHTGA
YPHTIAVFGNGLDQIYPIQNSKIIKDIYENSLALSTYEPDITAKGWQFLERNLITVALSDAVVVAQADIQSGSMSSARAA
IKFGIPLYVLPQRLGESSGTNELLQSGKAQIITDFDKFAMKFGVENYDNIGDEVVEFIKQNSNFDDCYAKFGDLIYEYEL
DGKIAIDGIYVRIL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=210231 CSUIS_RS03895 WP_086297236.1 766026..766790(+) (dprA) [Campylobacter porcelli strain RM6137]
ATGAGCTTTATCACTGAATTTAAGCTAAATTCAAATTTCCAAAATCCGCCAAAAAAGCTATATTATAAGGGGAATTTAAA
ATTATTAGATTATCCAAAAGTTGCGATTGTAGGCTCACGCAGATGCTCATCTTATACCAAAAATATGACTATAAATTTAG
CTTCAACCCTTAAAAAATATGGAGTTTGCGTAGTTAGTGGGGCAGCCATTGGGGTGGATATTTGCGCTCATACCGGAGCG
TATCCGCATACAATCGCAGTTTTTGGCAATGGTTTAGATCAAATTTATCCTATTCAAAACTCCAAAATCATAAAAGATAT
TTATGAAAATTCATTAGCGCTTAGCACATATGAGCCAGATATCACAGCAAAGGGGTGGCAATTTTTGGAGCGAAATTTAA
TCACAGTGGCTCTAAGTGACGCAGTTGTCGTAGCTCAAGCTGATATTCAAAGTGGCTCTATGAGTAGTGCTAGGGCTGCT
ATTAAATTTGGTATTCCGCTTTATGTATTGCCTCAAAGGCTTGGAGAAAGTAGTGGAACAAATGAGCTATTACAAAGTGG
TAAGGCACAGATTATCACTGATTTTGATAAATTTGCTATGAAATTTGGCGTGGAAAATTATGATAATATAGGCGATGAAG
TGGTGGAATTTATCAAGCAAAACTCAAATTTCGATGATTGTTATGCTAAATTTGGGGATTTGATATATGAGTATGAATTA
GATGGTAAGATTGCCATTGATGGCATTTATGTGAGAATTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9SWK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.983

92.126

0.516
  dprA Helicobacter pylori 26695

48.945

93.307

0.457

Multiple sequence alignment