Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BXP21_RS05630 | Genome accession | NZ_CP024071 |
| Coordinates | 1152654..1153664 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664450.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7.13_R1a | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1147654..1158664
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP21_RS05605 (BXP21_05600) | - | 1147841..1149163 (-) | 1323 | WP_000522712.1 | M23 family metallopeptidase | - |
| BXP21_RS05610 (BXP21_05605) | - | 1149173..1150114 (-) | 942 | WP_000770228.1 | outer membrane beta-barrel protein | - |
| BXP21_RS05615 (BXP21_05610) | - | 1150126..1150980 (-) | 855 | WP_001861250.1 | outer membrane beta-barrel protein | - |
| BXP21_RS05620 (BXP21_05615) | - | 1150970..1151692 (-) | 723 | WP_000523336.1 | hypothetical protein | - |
| BXP21_RS05625 (BXP21_05620) | panB | 1151841..1152653 (+) | 813 | WP_000062674.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| BXP21_RS05630 (BXP21_05625) | ruvB | 1152654..1153664 (+) | 1011 | WP_000664450.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BXP21_RS05635 (BXP21_05630) | tatB | 1153732..1154214 (+) | 483 | WP_000467556.1 | Sec-independent protein translocase protein TatB | - |
| BXP21_RS05640 (BXP21_05635) | tatC | 1154207..1154956 (+) | 750 | WP_000461244.1 | twin-arginine translocase subunit TatC | - |
| BXP21_RS05645 (BXP21_05640) | queA | 1154957..1155994 (+) | 1038 | WP_000657336.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| BXP21_RS05650 (BXP21_05645) | rsmG | 1155991..1156527 (+) | 537 | WP_001068835.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| BXP21_RS05655 (BXP21_05650) | - | 1156521..1156751 (+) | 231 | WP_000944425.1 | PP0621 family protein | - |
| BXP21_RS05660 (BXP21_05655) | - | 1156754..1157161 (+) | 408 | WP_000906038.1 | hypothetical protein | - |
| BXP21_RS05670 (BXP21_05665) | - | 1157293..1157937 (-) | 645 | WP_000348867.1 | outer membrane protein | - |
| BXP21_RS05675 (BXP21_05670) | - | 1158191..1158565 (+) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37282.34 Da Isoelectric Point: 6.3684
>NTDB_id=209983 BXP21_RS05630 WP_000664450.1 1152654..1153664(+) (ruvB) [Helicobacter pylori strain 7.13_R1a]
MKERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESTDEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
MKERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESTDEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=209983 BXP21_RS05630 WP_000664450.1 1152654..1153664(+) (ruvB) [Helicobacter pylori strain 7.13_R1a]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATCTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCACTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCACTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATCTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCACTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCACTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.917 |
100 |
0.979 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.251 |
96.131 |
0.512 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.155 |
96.131 |
0.482 |
| ruvB | Streptococcus pneumoniae R6 |
50.155 |
96.131 |
0.482 |
| ruvB | Streptococcus pneumoniae D39 |
50.155 |
96.131 |
0.482 |
| ruvB | Synechocystis sp. PCC 6803 |
52.145 |
90.179 |
0.47 |