Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BI317_RS14820 | Genome accession | NZ_CP018731 |
| Coordinates | 3206149..3206673 (-) | Length | 174 a.a. |
| NCBI ID | WP_006448868.1 | Uniprot ID | A0A6V7EHJ3 |
| Organism | Xanthomonas hortorum pv. gardneri strain ICMP 7383 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3201149..3211673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI317_RS14815 (BI317_14815) | - | 3203640..3205838 (-) | 2199 | WP_074057693.1 | TonB-dependent receptor | - |
| BI317_RS14820 (BI317_14820) | ssb | 3206149..3206673 (-) | 525 | WP_006448868.1 | single-stranded DNA-binding protein | Machinery gene |
| BI317_RS14825 (BI317_14825) | - | 3206947..3207945 (+) | 999 | WP_074057694.1 | polyprenyl synthetase family protein | - |
| BI317_RS14830 (BI317_14830) | murD | 3208147..3209556 (-) | 1410 | WP_074057695.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
| BI317_RS14835 (BI317_14835) | murL | 3209537..3210892 (-) | 1356 | WP_074057696.1 | UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase | - |
| BI317_RS14840 (BI317_14840) | - | 3210889..3211347 (-) | 459 | WP_006448872.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18785.72 Da Isoelectric Point: 5.3177
>NTDB_id=209911 BI317_RS14820 WP_006448868.1 3206149..3206673(-) (ssb) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=209911 BI317_RS14820 WP_006448868.1 3206149..3206673(-) (ssb) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
46.703 |
100 |
0.489 |
| ssb | Glaesserella parasuis strain SC1401 |
46.409 |
100 |
0.483 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
44.633 |
100 |
0.454 |