Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BJD10_RS18325 | Genome accession | NZ_CP018728 |
| Coordinates | 4056053..4056577 (-) | Length | 174 a.a. |
| NCBI ID | WP_006448868.1 | Uniprot ID | A0A6V7EHJ3 |
| Organism | Xanthomonas hortorum pv. gardneri strain JS749-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4051053..4061577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJD10_RS18320 (BJD10_18320) | - | 4053544..4055742 (-) | 2199 | WP_006448867.1 | TonB-dependent receptor | - |
| BJD10_RS18325 (BJD10_18325) | ssb | 4056053..4056577 (-) | 525 | WP_006448868.1 | single-stranded DNA-binding protein | Machinery gene |
| BJD10_RS18330 (BJD10_18330) | - | 4056851..4057849 (+) | 999 | WP_043907352.1 | polyprenyl synthetase family protein | - |
| BJD10_RS18335 (BJD10_18335) | murD | 4058051..4059460 (-) | 1410 | WP_043907354.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
| BJD10_RS18340 (BJD10_18340) | murL | 4059441..4060796 (-) | 1356 | WP_006448871.1 | UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase | - |
| BJD10_RS18345 (BJD10_18345) | - | 4060793..4061251 (-) | 459 | WP_006448872.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18785.72 Da Isoelectric Point: 5.3177
>NTDB_id=209893 BJD10_RS18325 WP_006448868.1 4056053..4056577(-) (ssb) [Xanthomonas hortorum pv. gardneri strain JS749-3]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYIEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQA
APPMDDFADDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=209893 BJD10_RS18325 WP_006448868.1 4056053..4056577(-) (ssb) [Xanthomonas hortorum pv. gardneri strain JS749-3]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAAGGC
GAGTTGCGCTACGACAAATACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAAGGTGGCGGTGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCACCGCGTCGTCAGCAGCCGGCCCAGCAGCAGGCC
GCGCCGCCGATGGATGACTTTGCGGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
46.703 |
100 |
0.489 |
| ssb | Glaesserella parasuis strain SC1401 |
46.409 |
100 |
0.483 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
44.633 |
100 |
0.454 |