Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BJD12_RS05400 | Genome accession | NZ_CP018725 |
| Coordinates | 1232672..1233214 (-) | Length | 180 a.a. |
| NCBI ID | WP_005998344.1 | Uniprot ID | F0BL56 |
| Organism | Xanthomonas vesicatoria ATCC 35937 strain LMG911 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1227672..1238214
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJD12_RS05380 (BJD12_05380) | - | 1227729..1228678 (-) | 950 | Protein_1012 | xanthine dehydrogenase family protein subunit M | - |
| BJD12_RS05385 (BJD12_05385) | paoA | 1228675..1229316 (-) | 642 | WP_039420008.1 | aldehyde dehydrogenase iron-sulfur subunit PaoA | - |
| BJD12_RS05390 (BJD12_05390) | - | 1229715..1230722 (-) | 1008 | WP_039420010.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| BJD12_RS05395 (BJD12_05395) | - | 1231031..1232515 (+) | 1485 | Protein_1015 | sensor domain-containing diguanylate cyclase | - |
| BJD12_RS05400 (BJD12_05400) | ssb | 1232672..1233214 (-) | 543 | WP_005998344.1 | single-stranded DNA-binding protein | Machinery gene |
| BJD12_RS05405 (BJD12_05405) | - | 1233486..1234484 (+) | 999 | WP_005997851.1 | polyprenyl synthetase family protein | - |
| BJD12_RS05410 (BJD12_05410) | - | 1234661..1235461 (-) | 801 | WP_005997849.1 | dienelactone hydrolase family protein | - |
| BJD12_RS05415 (BJD12_05415) | murD | 1235631..1237040 (-) | 1410 | WP_039420017.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19252.12 Da Isoelectric Point: 5.3177
>NTDB_id=209868 BJD12_RS05400 WP_005998344.1 1232672..1233214(-) (ssb) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSQAPRQQQGGGGGGQGGGYGGGGGGQDYAPRRQQ
PAQQQSAPPMDDFADDDIPF
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSQAPRQQQGGGGGGQGGGYGGGGGGQDYAPRRQQ
PAQQQSAPPMDDFADDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=209868 BJD12_RS05400 WP_005998344.1 1232672..1233214(-) (ssb) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCGACCACCAGCATGCGCAAGGATCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ATCGCGTGGTTTTCTTCGGGAAGCTTGGTGAAATCGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGTCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGTGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGC
AGGGCGGGGGTGGCGGCGGACAAGGCGGCGGCTACGGCGGTGGCGGTGGCGGTCAGGATTATGCCCCGCGTCGTCAACAG
CCGGCCCAGCAGCAGTCGGCACCGCCGATGGACGATTTTGCGGATGACGATATTCCGTTTTGA
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCGACCACCAGCATGCGCAAGGATCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ATCGCGTGGTTTTCTTCGGGAAGCTTGGTGAAATCGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGTCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGTGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGC
AGGGCGGGGGTGGCGGCGGACAAGGCGGCGGCTACGGCGGTGGCGGTGGCGGTCAGGATTATGCCCCGCGTCGTCAACAG
CCGGCCCAGCAGCAGTCGGCACCGCCGATGGACGATTTTGCGGATGACGATATTCCGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
43.939 |
100 |
0.483 |
| ssb | Glaesserella parasuis strain SC1401 |
45.699 |
100 |
0.472 |
| ssb | Neisseria meningitidis MC58 |
44.382 |
98.889 |
0.439 |
| ssb | Neisseria gonorrhoeae MS11 |
44.382 |
98.889 |
0.439 |