Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAV_RS02025 | Genome accession | NC_002758 |
| Coordinates | 412149..412652 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus subsp. aureus Mu50 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 407992..456457 | 412149..412652 | within | 0 |
Gene organization within MGE regions
Location: 407992..456457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAV_RS01995 (SAV0360) | - | 408089..408934 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| SAV_RS02000 (SAV0361) | - | 409088..409969 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| SAV_RS02005 (SAV0362) | - | 409999..410202 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| SAV_RS02010 (SAV0363) | ychF | 410214..411311 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| SAV_RS02015 (SAV0364) | - | 411397..411588 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| SAV_RS02020 (SAV0365) | rpsF | 411832..412128 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| SAV_RS02025 (SAV0366) | ssbA | 412149..412652 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| SAV_RS02030 (SAV0367) | rpsR | 412704..412946 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| SAV_RS02035 (SAV0368) | - | 413223..414161 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| SAV_RS14965 | - | 414200..414913 (-) | 714 | Protein_368 | tyrosine-type recombinase/integrase | - |
| SAV_RS02045 (SAV0370) | selX | 415119..415730 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| SAV_RS02050 (SAV0371) | - | 416099..416467 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| SAV_RS02055 (SAV0372) | - | 416648..417220 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| SAV_RS02060 (SAV0373) | - | 417357..417620 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| SAV_RS02065 (SAV0374) | - | 417920..418171 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| SAV_RS02070 (SAV0375) | - | 418210..418419 (-) | 210 | WP_000211677.1 | hypothetical protein | - |
| SAV_RS02075 (SAV0376) | - | 418597..419178 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| SAV_RS02080 (SAV0377) | - | 419244..419627 (-) | 384 | WP_000868259.1 | hypothetical protein | - |
| SAV_RS02085 (SAV0378) | - | 419897..420523 (-) | 627 | WP_000746679.1 | NDxxF motif lipoprotein | - |
| SAV_RS02090 (SAV0379) | - | 420596..420831 (-) | 236 | Protein_378 | hypothetical protein | - |
| SAV_RS02095 (SAV0380) | ahpF | 420967..422490 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| SAV_RS02100 (SAV0381) | ahpC | 422506..423075 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| SAV_RS02105 (SAV0382) | nfsA | 423567..424322 (+) | 756 | WP_001287099.1 | oxygen-insensitive NADPH nitroreductase | - |
| SAV_RS02110 (SAV0383) | - | 424402..425790 (-) | 1389 | WP_000991018.1 | L-cystine transporter | - |
| SAV_RS02115 | - | 425875..425973 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| SAV_RS02120 (SAV0384) | - | 426637..427956 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| SAV_RS16035 | - | 428004..428075 (+) | 72 | WP_370591525.1 | hypothetical protein | - |
| SAV_RS02125 (SAV0385) | - | 428288..429244 (-) | 957 | WP_000956137.1 | hypothetical protein | - |
| SAV_RS02130 (SAV0386) | - | 429362..430024 (-) | 663 | WP_000394690.1 | hypothetical protein | - |
| SAV_RS02135 (SAV0387) | - | 430167..430574 (-) | 408 | WP_000763767.1 | general stress protein | - |
| SAV_RS02140 (SAV0388) | xpt | 431087..431665 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| SAV_RS02145 (SAV0389) | pbuX | 431665..432933 (+) | 1269 | WP_000793018.1 | xanthine permease PbuX | - |
| SAV_RS02150 (SAV0390) | guaB | 432971..434437 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| SAV_RS02155 (SAV0391) | guaA | 434462..436003 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| SAV_RS02160 (SAV0392) | - | 436071..437264 (-) | 1194 | WP_000237797.1 | site-specific integrase | - |
| SAV_RS02165 (SAV0393) | - | 437291..437491 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| SAV_RS02170 (SAV0394) | - | 437989..438219 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| SAV_RS02175 (SAV0395) | - | 438216..438638 (-) | 423 | WP_000804879.1 | RNA polymerase sigma factor | - |
| SAV_RS02180 (SAV0397) | - | 439169..439522 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| SAV_RS14980 | - | 439580..439764 (-) | 185 | Protein_398 | cysteine-rich KTR domain-containing protein | - |
| SAV_RS02185 (SAV0398) | tet(M) | 439865..441784 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| SAV_RS14985 | - | 441800..441916 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| SAV_RS02190 (SAV0399) | - | 442161..443090 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| SAV_RS02195 (SAV0400) | - | 443107..444129 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| SAV_RS02200 (SAV0401) | - | 444126..446153 (-) | 2028 | WP_000192393.1 | CD3337/EF1877 family mobilome membrane protein | - |
| SAV_RS02205 (SAV0402) | - | 446150..448603 (-) | 2454 | WP_000331165.1 | ATP-binding protein | - |
| SAV_RS02210 (SAV0403) | - | 448587..448982 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| SAV_RS02215 (SAV0404) | - | 449054..449692 (-) | 639 | WP_000248477.1 | DUF6037 family protein | - |
| SAV_RS02220 (SAV0405) | - | 449748..450248 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| SAV_RS02225 (SAV0406) | - | 450309..451088 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| SAV_RS02230 (SAV0407) | - | 451130..451351 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| SAV_RS14990 | - | 451348..451590 (-) | 243 | WP_078056044.1 | hypothetical protein | - |
| SAV_RS02235 (SAV0408) | mobT | 451634..452818 (-) | 1185 | WP_000426689.1 | MobT family relaxase | - |
| SAV_RS02240 (SAV0409) | - | 453000..454403 (-) | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| SAV_RS02245 (SAV0410) | - | 454425..455198 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| SAV_RS02250 (SAV0411) | - | 455208..455585 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| SAV_RS02255 (SAV0412) | - | 455606..455920 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=20933 SAV_RS02025 WP_000934799.1 412149..412652(+) (ssbA) [Staphylococcus aureus subsp. aureus Mu50]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=20933 SAV_RS02025 WP_000934799.1 412149..412652(+) (ssbA) [Staphylococcus aureus subsp. aureus Mu50]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |