Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BI313_RS10400 Genome accession   NZ_CP018470
Coordinates   2107294..2108352 (-) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas vesicatoria strain LM159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102294..2113352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI313_RS10380 (BI313_10315) - 2103351..2105297 (-) 1947 WP_039423789.1 type IV pilus secretin PilQ family protein -
  BI313_RS10385 (BI313_10320) - 2105317..2105850 (-) 534 WP_005995831.1 pilus assembly protein PilP -
  BI313_RS10390 (BI313_10325) - 2105847..2106512 (-) 666 WP_005995833.1 type 4a pilus biogenesis protein PilO -
  BI313_RS10395 (BI313_10330) - 2106509..2107294 (-) 786 WP_039423790.1 PilN domain-containing protein -
  BI313_RS10400 (BI313_10335) comM 2107294..2108352 (-) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  BI313_RS10405 (BI313_10340) - 2108472..2110997 (+) 2526 WP_074052524.1 penicillin-binding protein 1A -
  BI313_RS10410 (BI313_10345) - 2111557..2112189 (+) 633 WP_039423793.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=208840 BI313_RS10400 WP_039423791.1 2107294..2108352(-) (comM) [Xanthomonas vesicatoria strain LM159]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=208840 BI313_RS10400 WP_039423791.1 2107294..2108352(-) (comM) [Xanthomonas vesicatoria strain LM159]
GTGGGGCTTTTACCAAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGTCGCGCCATCAATCGCTCCGGCAGCAAGGCCAAGAATGCGGCTGCGGCC
GTTGCCGGGTCGGCGGTGATCACCAAGTTGATCCCCATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTTGGTCCGATGCCCAATA
GCCCGGACATGGTCCAGGTGCTTCTGGCCGCCTCGCGCTCGGAGAATGTGGAATTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCTTTTGCCCTGGTTGCCAGCGAACTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTCGATATCGGCGCGACCATGACCACGCTGAGCGTGTTGCGCTCCGGTCGTAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGTCGCGCCTGCCGGAGATGGTCGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCG
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCACGCGCTGGCGCTGGATGCGCCCGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment