Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CPG33_RS04980 Genome accession   NZ_CP023543
Coordinates   945727..946734 (+) Length   335 a.a.
NCBI ID   WP_002859650.1    Uniprot ID   Q5HT48
Organism   Campylobacter jejuni strain CFSAN032806     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940727..951734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG33_RS09760 - 942393..943343 (-) 951 WP_002871964.1 autotransporter outer membrane beta-barrel domain-containing protein -
  CPG33_RS09765 - 943533..944054 (-) 522 WP_002799188.1 hypothetical protein -
  CPG33_RS09770 - 944207..944665 (-) 459 WP_002871965.1 hypothetical protein -
  CPG33_RS04975 (CPG33_04975) - 945226..945636 (-) 411 WP_002783915.1 hypothetical protein -
  CPG33_RS04980 (CPG33_04980) ruvB 945727..946734 (+) 1008 WP_002859650.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CPG33_RS04985 (CPG33_04985) amaA 946738..947781 (+) 1044 WP_002862038.1 AI-2E family transporter -
  CPG33_RS04990 (CPG33_04990) fumC 947811..949202 (-) 1392 WP_002875258.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37295.85 Da        Isoelectric Point: 4.9081

>NTDB_id=208162 CPG33_RS04980 WP_002859650.1 945727..946734(+) (ruvB) [Campylobacter jejuni strain CFSAN032806]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=208162 CPG33_RS04980 WP_002859650.1 945727..946734(+) (ruvB) [Campylobacter jejuni strain CFSAN032806]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HT48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Streptococcus pneumoniae TIGR4

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae R6

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae D39

48.632

98.209

0.478
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475

Multiple sequence alignment