Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BS103_RS16050 Genome accession   NZ_CP018332
Coordinates   3330799..3331617 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain A1296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3325799..3336617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS103_RS16035 (BS103_16020) pilE 3326025..3326450 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  BS103_RS16040 (BS103_16025) pilY2 3326447..3326929 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  BS103_RS16045 (BS103_16030) pilY1 3326942..3330787 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  BS103_RS16050 (BS103_16035) pilX 3330799..3331617 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BS103_RS16055 (BS103_16040) pilW 3331614..3332615 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  BS103_RS16060 (BS103_16045) pilV 3332616..3333176 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  BS103_RS16065 (BS103_16050) fimU 3333170..3333643 (-) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  BS103_RS16070 (BS103_16055) ispH 3333813..3334763 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BS103_RS16075 (BS103_16060) gmk 3334886..3335515 (+) 630 WP_000015937.1 guanylate kinase -
  BS103_RS16080 (BS103_16065) rpoZ 3335588..3335866 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BS103_RS18475 - 3335905..3336035 (+) 131 Protein_3121 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=208127 BS103_RS16050 WP_000149376.1 3330799..3331617(-) (pilX) [Acinetobacter baumannii strain A1296]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=208127 BS103_RS16050 WP_000149376.1 3330799..3331617(-) (pilX) [Acinetobacter baumannii strain A1296]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment