Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   BS103_RS16035 Genome accession   NZ_CP018332
Coordinates   3326025..3326450 (-) Length   141 a.a.
NCBI ID   WP_005127886.1    Uniprot ID   A0A9E9MD02
Organism   Acinetobacter baumannii strain A1296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3321025..3331450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS103_RS16005 (BS103_15990) - 3321557..3322588 (+) 1032 WP_001189457.1 lipase secretion chaperone -
  BS103_RS16010 (BS103_15995) - 3322703..3323644 (+) 942 WP_097355459.1 lipase family alpha/beta hydrolase -
  BS103_RS16015 (BS103_16000) rplS 3323697..3324065 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  BS103_RS16020 (BS103_16005) trmD 3324273..3325013 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BS103_RS16025 (BS103_16010) rimM 3325059..3325607 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  BS103_RS16030 (BS103_16015) rpsP 3325627..3325878 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  BS103_RS16035 (BS103_16020) pilE 3326025..3326450 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  BS103_RS16040 (BS103_16025) pilY2 3326447..3326929 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  BS103_RS16045 (BS103_16030) pilY1 3326942..3330787 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15189.44 Da        Isoelectric Point: 7.8144

>NTDB_id=208124 BS103_RS16035 WP_005127886.1 3326025..3326450(-) (pilE) [Acinetobacter baumannii strain A1296]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSLQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=208124 BS103_RS16035 WP_005127886.1 3326025..3326450(-) (pilE) [Acinetobacter baumannii strain A1296]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTT
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-108)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.071

100

0.901
  comF Acinetobacter baylyi ADP1

50

99.291

0.496

Multiple sequence alignment