Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | TE101_RS00895 | Genome accession | NZ_CP018321 |
| Coordinates | 199233..199817 (+) | Length | 194 a.a. |
| NCBI ID | WP_101563267.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii strain Te101 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 123923..200085 | 199233..199817 | within | 0 |
Gene organization within MGE regions
Location: 123923..200085
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TE101_RS00570 (TE101_00575) | - | 124566..125747 (+) | 1182 | WP_101563246.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| TE101_RS00575 (TE101_00580) | - | 125807..126478 (-) | 672 | WP_039226909.1 | OmpW family protein | - |
| TE101_RS00580 (TE101_00585) | - | 126616..127083 (-) | 468 | WP_014947817.1 | hypothetical protein | - |
| TE101_RS00585 (TE101_00590) | - | 127308..127616 (+) | 309 | WP_014947818.1 | hypothetical protein | - |
| TE101_RS00590 (TE101_00595) | - | 127767..128954 (+) | 1188 | WP_101566505.1 | diguanylate phosphodiesterase | - |
| TE101_RS00595 (TE101_00600) | - | 129163..130710 (+) | 1548 | WP_232379105.1 | diguanylate cyclase | - |
| TE101_RS00600 (TE101_00605) | - | 130752..131636 (-) | 885 | WP_039226907.1 | ArgP/LysG family DNA-binding transcriptional regulator | - |
| TE101_RS00605 (TE101_00610) | - | 131814..132416 (+) | 603 | WP_014975330.1 | LysE/ArgO family amino acid transporter | - |
| TE101_RS00610 (TE101_00615) | - | 132532..132849 (+) | 318 | WP_014947823.1 | multidrug efflux SMR transporter | - |
| TE101_RS00615 (TE101_00620) | - | 132924..133640 (-) | 717 | WP_014977950.1 | DUF1499 domain-containing protein | - |
| TE101_RS00620 (TE101_00625) | - | 133836..134528 (+) | 693 | WP_101563248.1 | DNA-J related domain-containing protein | - |
| TE101_RS00625 (TE101_00630) | - | 134845..135990 (+) | 1146 | WP_014947826.1 | efflux RND transporter periplasmic adaptor subunit | - |
| TE101_RS00630 (TE101_00635) | - | 136012..139110 (+) | 3099 | WP_014947827.1 | efflux RND transporter permease subunit | - |
| TE101_RS00635 (TE101_00640) | - | 139167..139664 (+) | 498 | WP_014947828.1 | alpha/beta hydrolase | - |
| TE101_RS00640 (TE101_00645) | - | 139778..141619 (+) | 1842 | WP_014947829.1 | bifunctional acetyl-CoA hydrolase/transferase family protein/GNAT family N-acetyltransferase | - |
| TE101_RS00645 (TE101_00650) | - | 141616..142596 (+) | 981 | WP_014947830.1 | histone deacetylase family protein | - |
| TE101_RS00650 (TE101_00655) | - | 142692..143432 (-) | 741 | WP_101563249.1 | MauE/DoxX family redox-associated membrane protein | - |
| TE101_RS00655 (TE101_00660) | - | 143555..144073 (-) | 519 | WP_101563250.1 | DUF6436 domain-containing protein | - |
| TE101_RS00660 (TE101_00665) | - | 144110..145591 (-) | 1482 | WP_101563251.1 | methyl-accepting chemotaxis protein | - |
| TE101_RS00665 (TE101_00670) | - | 145765..146637 (+) | 873 | WP_101563252.1 | RimK family alpha-L-glutamate ligase | - |
| TE101_RS00670 (TE101_00675) | - | 146719..148161 (-) | 1443 | WP_101563253.1 | DUF3300 domain-containing protein | - |
| TE101_RS00675 (TE101_00680) | ribA | 148297..148911 (-) | 615 | WP_014947836.1 | GTP cyclohydrolase II | - |
| TE101_RS00680 (TE101_00685) | - | 149044..151890 (-) | 2847 | WP_014947837.1 | EAL domain-containing protein | - |
| TE101_RS00685 (TE101_00690) | - | 151979..152296 (-) | 318 | WP_014975341.1 | hypothetical protein | - |
| TE101_RS00690 (TE101_00695) | - | 152402..153070 (+) | 669 | WP_014975342.1 | glutathione S-transferase | - |
| TE101_RS00695 (TE101_00700) | recQ | 153154..154995 (-) | 1842 | WP_039226893.1 | DNA helicase RecQ | - |
| TE101_RS00700 (TE101_00705) | - | 155209..155721 (+) | 513 | WP_014975344.1 | thioesterase family protein | - |
| TE101_RS00705 (TE101_00710) | - | 155808..157145 (+) | 1338 | WP_014977961.1 | magnesium transporter | - |
| TE101_RS00710 (TE101_00715) | rarD | 157375..158289 (+) | 915 | WP_101563254.1 | EamA family transporter RarD | - |
| TE101_RS00715 (TE101_00720) | - | 158356..159633 (-) | 1278 | WP_014977963.1 | diguanylate cyclase | - |
| TE101_RS00720 (TE101_00725) | uvrD | 159676..161847 (-) | 2172 | WP_014977964.1 | DNA helicase II | - |
| TE101_RS00725 (TE101_00730) | cysE | 162311..163117 (+) | 807 | WP_014947845.1 | serine O-acetyltransferase | - |
| TE101_RS00730 (TE101_00735) | - | 163215..164723 (-) | 1509 | WP_101563255.1 | diguanylate cyclase | - |
| TE101_RS00735 (TE101_00740) | - | 164893..165633 (-) | 741 | WP_101563256.1 | HAD-IA family hydrolase | - |
| TE101_RS00740 (TE101_00745) | xerC | 165654..166574 (-) | 921 | WP_014947848.1 | tyrosine recombinase XerC | - |
| TE101_RS00745 (TE101_00750) | - | 166580..167275 (-) | 696 | WP_014947849.1 | DUF484 family protein | - |
| TE101_RS00750 (TE101_00755) | dapF | 167272..168102 (-) | 831 | WP_014947850.1 | diaminopimelate epimerase | - |
| TE101_RS00755 (TE101_00760) | lysA | 168138..169388 (-) | 1251 | WP_101563257.1 | diaminopimelate decarboxylase | - |
| TE101_RS00760 (TE101_00765) | lptM | 169388..169624 (-) | 237 | WP_069943528.1 | LPS translocon maturation chaperone LptM | - |
| TE101_RS00765 (TE101_00770) | - | 169637..170704 (-) | 1068 | WP_014947853.1 | MJ1255/VC2487 family glycosyltransferase | - |
| TE101_RS00770 (TE101_00775) | - | 170706..171224 (-) | 519 | WP_014947854.1 | phosphatase PAP2 family protein | - |
| TE101_RS00775 (TE101_00780) | rraA | 171577..172062 (+) | 486 | WP_014947855.1 | ribonuclease E activity regulator RraA | - |
| TE101_RS00780 (TE101_00785) | - | 172151..173392 (+) | 1242 | WP_101563258.1 | ABC transporter substrate-binding protein | - |
| TE101_RS00785 (TE101_00790) | - | 173424..174233 (-) | 810 | WP_039226872.1 | S1/P1 nuclease | - |
| TE101_RS00790 (TE101_00795) | - | 174236..174868 (-) | 633 | WP_014975357.1 | flavin prenyltransferase UbiX | - |
| TE101_RS00795 (TE101_00800) | mpl | 174940..176298 (-) | 1359 | WP_101563259.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| TE101_RS00800 (TE101_00805) | - | 176610..177587 (+) | 978 | WP_014947860.1 | class 1 fructose-bisphosphatase | - |
| TE101_RS00805 (TE101_00810) | ppa | 177718..178248 (+) | 531 | WP_014947861.1 | inorganic diphosphatase | - |
| TE101_RS00810 (TE101_00815) | - | 178390..178875 (+) | 486 | WP_014947862.1 | DUF3299 domain-containing protein | - |
| TE101_RS00815 (TE101_00820) | - | 178903..179850 (+) | 948 | WP_101563260.1 | dihydrodipicolinate synthase family protein | - |
| TE101_RS00820 (TE101_00825) | - | 179847..180545 (-) | 699 | WP_014975360.1 | 2OG-Fe(II) oxygenase | - |
| TE101_RS00825 (TE101_00830) | - | 180568..180987 (-) | 420 | WP_101563261.1 | thioesterase family protein | - |
| TE101_RS00830 (TE101_00835) | - | 181201..181677 (+) | 477 | WP_014947866.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| TE101_RS00835 (TE101_00840) | - | 181689..182924 (+) | 1236 | WP_101563262.1 | S41 family peptidase | - |
| TE101_RS00840 (TE101_00845) | - | 183001..184503 (+) | 1503 | WP_039226858.1 | Hsp70 family protein | - |
| TE101_RS21335 | - | 184581..184748 (-) | 168 | WP_012516741.1 | hypothetical protein | - |
| TE101_RS00845 (TE101_00850) | uvrA | 184952..187783 (-) | 2832 | WP_049587075.1 | excinuclease ABC subunit UvrA | - |
| TE101_RS00850 (TE101_00855) | - | 188152..189489 (+) | 1338 | WP_101563263.1 | MFS transporter | - |
| TE101_RS00855 (TE101_00860) | - | 189555..190139 (+) | 585 | WP_014977981.1 | HAD family phosphatase | - |
| TE101_RS00860 (TE101_00865) | - | 190214..190828 (-) | 615 | WP_230633747.1 | hypothetical protein | - |
| TE101_RS00865 (TE101_00870) | - | 191061..191924 (+) | 864 | WP_039226852.1 | alpha/beta hydrolase | - |
| TE101_RS00870 (TE101_00875) | - | 192336..193337 (-) | 1002 | WP_014947876.1 | LacI family DNA-binding transcriptional regulator | - |
| TE101_RS00875 (TE101_00880) | - | 193666..194685 (+) | 1020 | WP_101563264.1 | aldose epimerase family protein | - |
| TE101_RS00880 (TE101_00885) | - | 194858..195913 (+) | 1056 | WP_101563265.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| TE101_RS00885 (TE101_00890) | galK | 195906..197045 (+) | 1140 | WP_014947879.1 | galactokinase | - |
| TE101_RS00890 (TE101_00895) | - | 197403..198965 (+) | 1563 | WP_101563266.1 | sodium/sugar symporter | - |
| TE101_RS00895 (TE101_00900) | ssb | 199233..199817 (+) | 585 | WP_101563267.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21165.06 Da Isoelectric Point: 5.2494
>NTDB_id=208049 TE101_RS00895 WP_101563267.1 199233..199817(+) (ssb) [Alteromonas macleodii strain Te101]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPHGGNQGQPKNPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPHGGNQGQPKNPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 585 bp
>NTDB_id=208049 TE101_RS00895 WP_101563267.1 199233..199817(+) (ssb) [Alteromonas macleodii strain Te101]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCAGGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCATGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCAGGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCATGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.566 |
100 |
0.577 |
| ssb | Vibrio cholerae strain A1552 |
54.5 |
100 |
0.562 |
| ssb | Neisseria meningitidis MC58 |
46.875 |
98.969 |
0.464 |
| ssb | Neisseria gonorrhoeae MS11 |
46.875 |
98.969 |
0.464 |