Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BSZ04_RS09720 | Genome accession | NZ_CP018312 |
| Coordinates | 149973..150566 (+) | Length | 197 a.a. |
| NCBI ID | WP_088880303.1 | Uniprot ID | - |
| Organism | Vibrio rotiferianus strain B64D1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 144973..155566
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ04_RS09705 (BSZ04_09600) | - | 145685..148252 (-) | 2568 | WP_088880300.1 | penicillin-binding protein 1A | - |
| BSZ04_RS09710 (BSZ04_09605) | pilM | 148393..149409 (+) | 1017 | WP_088880301.1 | type IV pilus assembly protein PilM | Machinery gene |
| BSZ04_RS09715 (BSZ04_09610) | pilN | 149393..149980 (+) | 588 | WP_088880302.1 | PilN domain-containing protein | Machinery gene |
| BSZ04_RS09720 (BSZ04_09615) | pilO | 149973..150566 (+) | 594 | WP_088880303.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BSZ04_RS09725 (BSZ04_09620) | pilP | 150556..151068 (+) | 513 | WP_088880304.1 | pilus assembly protein PilP | Machinery gene |
| BSZ04_RS09730 (BSZ04_09625) | pilQ | 151106..152839 (+) | 1734 | WP_088880305.1 | type IV pilus secretin PilQ | Machinery gene |
| BSZ04_RS09735 (BSZ04_09630) | aroK | 153028..153546 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| BSZ04_RS09740 (BSZ04_09635) | aroB | 153578..154678 (+) | 1101 | WP_010443901.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23057.31 Da Isoelectric Point: 4.4691
>NTDB_id=207978 BSZ04_RS09720 WP_088880303.1 149973..150566(+) (pilO) [Vibrio rotiferianus strain B64D1]
MSNWQDLELDEILDWPIVPQIFVIIVFAFLLQGMGYWFFLKSEGERLEQLVEEERRLKVMLKSKANKVAALPQLQSQLDE
LTTRYEYLLQQLPAQKELATMLASVNELGIDNNLTFARIDWGEKQPERFLYRLPLNIELTGSYHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVKASTFQFNPEETNDEG
MSNWQDLELDEILDWPIVPQIFVIIVFAFLLQGMGYWFFLKSEGERLEQLVEEERRLKVMLKSKANKVAALPQLQSQLDE
LTTRYEYLLQQLPAQKELATMLASVNELGIDNNLTFARIDWGEKQPERFLYRLPLNIELTGSYHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVKASTFQFNPEETNDEG
Nucleotide
Download Length: 594 bp
>NTDB_id=207978 BSZ04_RS09720 WP_088880303.1 149973..150566(+) (pilO) [Vibrio rotiferianus strain B64D1]
ATGAGTAACTGGCAAGACTTAGAACTAGATGAAATTCTAGATTGGCCAATTGTTCCACAAATATTTGTCATTATTGTTTT
TGCCTTTTTATTGCAAGGCATGGGGTATTGGTTTTTCCTCAAGTCTGAAGGGGAGAGGCTTGAGCAATTGGTCGAAGAAG
AGCGTCGGCTTAAAGTTATGTTGAAGAGCAAAGCCAATAAGGTTGCTGCATTACCTCAATTGCAATCCCAACTTGATGAG
TTAACGACACGTTACGAGTATTTGCTCCAACAACTCCCTGCTCAAAAGGAGCTCGCCACTATGCTGGCTTCTGTCAATGA
ACTTGGGATAGACAACAACCTTACTTTCGCACGGATTGATTGGGGGGAGAAACAACCTGAGCGTTTCTTATATCGTTTGC
CATTAAACATTGAGTTGACAGGGAGTTACCATGACATCGGTCGTTTTTCCCAAGCGATAGCGACGCTACCTCGAATCATT
ACCTTCCAAGATGTTACCTGGCAAAGAGTCAGTCAAGAAAGTGAGACCCTACATTTTAGAGTGAAAGCGAGCACATTCCA
ATTTAATCCAGAGGAAACAAATGATGAGGGCTAA
ATGAGTAACTGGCAAGACTTAGAACTAGATGAAATTCTAGATTGGCCAATTGTTCCACAAATATTTGTCATTATTGTTTT
TGCCTTTTTATTGCAAGGCATGGGGTATTGGTTTTTCCTCAAGTCTGAAGGGGAGAGGCTTGAGCAATTGGTCGAAGAAG
AGCGTCGGCTTAAAGTTATGTTGAAGAGCAAAGCCAATAAGGTTGCTGCATTACCTCAATTGCAATCCCAACTTGATGAG
TTAACGACACGTTACGAGTATTTGCTCCAACAACTCCCTGCTCAAAAGGAGCTCGCCACTATGCTGGCTTCTGTCAATGA
ACTTGGGATAGACAACAACCTTACTTTCGCACGGATTGATTGGGGGGAGAAACAACCTGAGCGTTTCTTATATCGTTTGC
CATTAAACATTGAGTTGACAGGGAGTTACCATGACATCGGTCGTTTTTCCCAAGCGATAGCGACGCTACCTCGAATCATT
ACCTTCCAAGATGTTACCTGGCAAAGAGTCAGTCAAGAAAGTGAGACCCTACATTTTAGAGTGAAAGCGAGCACATTCCA
ATTTAATCCAGAGGAAACAAATGATGAGGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
78.421 |
96.447 |
0.756 |
| pilO | Vibrio cholerae strain A1552 |
64.286 |
99.492 |
0.64 |