Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSR56_RS00915 Genome accession   NZ_CP018260
Coordinates   192913..193491 (+) Length   192 a.a.
NCBI ID   WP_100833074.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain XH900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 187913..198491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR56_RS00890 (BSR56_00895) tenA 188235..188909 (-) 675 WP_005088650.1 thiaminase II -
  BSR56_RS00895 (BSR56_00900) - 189081..190163 (+) 1083 WP_005087141.1 DUF475 domain-containing protein -
  BSR56_RS00900 (BSR56_00905) - 190295..191659 (+) 1365 WP_035374987.1 MFS transporter -
  BSR56_RS00905 (BSR56_00910) ssb 191711..192100 (+) 390 Protein_173 single-stranded DNA-binding protein -
  BSR56_RS00910 (BSR56_00915) - 192100..192861 (+) 762 Protein_174 MFS transporter -
  BSR56_RS00915 (BSR56_00920) ssb 192913..193491 (+) 579 WP_100833074.1 single-stranded DNA-binding protein Machinery gene
  BSR56_RS00925 (BSR56_00930) - 193893..195326 (+) 1434 WP_075314455.1 amino acid permease -
  BSR56_RS00930 (BSR56_00935) - 195385..196887 (-) 1503 WP_100833076.1 PLP-dependent aminotransferase family protein -
  BSR56_RS00935 (BSR56_00940) gabT 197042..198334 (+) 1293 WP_100833077.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21083.76 Da        Isoelectric Point: 6.7311

>NTDB_id=207809 BSR56_RS00915 WP_100833074.1 192913..193491(+) (ssb) [Acinetobacter haemolyticus strain XH900]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGSPQAGNGFNSPKAPQPAATAPADLDDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=207809 BSR56_RS00915 WP_100833074.1 192913..193491(+) (ssb) [Acinetobacter haemolyticus strain XH900]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCGAAGGTTTATATCGAAGGT
TCGCTACGTACTCGTCAGTGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAGATGCAAAT
GCTTGATTCACGTCAGCAGAGCGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGAT
ACCAAAACACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGAAACCAAGGCAATTAT
GCTGGCAGCCCACAAGCTGGAAATGGCTTTAACTCGCCTAAAGCACCACAACCTGCTGCGACAGCACCTGCTGATTTAGA
TGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.731

100

0.562
  ssb Vibrio cholerae strain A1552

45.178

100

0.464
  ssb Neisseria meningitidis MC58

38.342

100

0.385
  ssb Neisseria gonorrhoeae MS11

38.342

100

0.385

Multiple sequence alignment