Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BSR55_RS00915 Genome accession   NZ_CP018259
Coordinates   197664..198791 (-) Length   375 a.a.
NCBI ID   WP_005034547.1    Uniprot ID   N9ECF8
Organism   Acinetobacter bereziniae strain XH901     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 192664..203791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS00890 (BSR55_00890) - 192773..193519 (-) 747 WP_005034555.1 helix-turn-helix domain-containing protein -
  BSR55_RS00895 (BSR55_00895) - 193531..194775 (-) 1245 WP_004831963.1 MFS transporter -
  BSR55_RS00900 (BSR55_00900) - 194916..195560 (+) 645 WP_100884327.1 TetR/AcrR family transcriptional regulator -
  BSR55_RS00905 (BSR55_00905) - 195717..196616 (+) 900 WP_004831959.1 DMT family transporter -
  BSR55_RS00910 (BSR55_00910) - 197047..197616 (-) 570 WP_100884328.1 L-threonylcarbamoyladenylate synthase -
  BSR55_RS00915 (BSR55_00915) dprA 197664..198791 (-) 1128 WP_005034547.1 DNA-processing protein DprA Machinery gene
  BSR55_RS00920 (BSR55_00920) tsaP 198815..199966 (-) 1152 WP_004831953.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BSR55_RS00925 (BSR55_00925) def 200090..200620 (+) 531 WP_004831951.1 peptide deformylase -
  BSR55_RS00930 (BSR55_00930) - 200689..201192 (+) 504 WP_373867684.1 DUF2946 family protein -
  BSR55_RS00935 (BSR55_00935) - 201275..203353 (+) 2079 WP_058968556.1 TonB-dependent copper receptor -
  BSR55_RS00940 (BSR55_00940) - 203379..203621 (+) 243 WP_004831945.1 DUF4199 domain-containing protein -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 41964.71 Da        Isoelectric Point: 6.5581

>NTDB_id=207773 BSR55_RS00915 WP_005034547.1 197664..198791(-) (dprA) [Acinetobacter bereziniae strain XH901]
MLNQIPDHQLNAIQLWYLVQHSTSAFRKLESYFGSIAKAVAPESLPRWSELKIHKNHIERANVFVTAQGQSQFKICLDKI
QQHSDFILLDTDSNYPQQLLPYQNHPPILFGKGSSQNLSQPQIAIVGSRKASPHGKQVAYDFAYYLSEKGFFITSGLAQG
IDEAAHMGGLKNQRTIAVIGTGLDLVYPSQNRKLQEQILQNSGSIISEYLPETQPISRNFPYRNRIVSGLSLGVLVAEAQ
LGSGSLITAQTAAEQGKIIFAIPGHIYGEHHQGCHQLIREGAILVDHPEQIVEDLALPTQWQCTQQAETNSQPPEIPEYL
FQLYQLLDWIGQDLDTLAQKSKLNTAQLTSYLMELELLGLCIQQSGLYLRCRVSY

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=207773 BSR55_RS00915 WP_005034547.1 197664..198791(-) (dprA) [Acinetobacter bereziniae strain XH901]
ATGTTGAATCAAATACCCGATCATCAATTGAATGCCATTCAACTTTGGTATTTGGTTCAACACTCAACCAGCGCCTTCCG
TAAGCTAGAGAGTTATTTTGGTTCTATTGCAAAAGCGGTAGCTCCAGAAAGCTTACCCCGTTGGTCTGAACTTAAAATTC
ATAAAAATCATATCGAGCGAGCCAATGTCTTTGTAACAGCACAAGGACAATCCCAATTTAAAATATGCTTAGATAAAATC
CAACAACATAGTGATTTTATTCTGTTAGATACCGATTCAAATTACCCACAACAACTGCTTCCTTATCAAAACCATCCTCC
AATTTTATTTGGAAAAGGGTCTTCACAAAACTTGAGTCAACCTCAGATTGCAATTGTCGGTAGTCGAAAAGCCAGTCCGC
ATGGAAAACAAGTGGCATATGATTTTGCTTATTATTTAAGTGAAAAAGGCTTTTTTATTACCAGCGGTTTAGCGCAAGGA
ATTGATGAAGCTGCACATATGGGTGGTCTCAAAAACCAGCGAACCATTGCTGTGATTGGTACAGGGTTAGATTTAGTTTA
TCCAAGCCAAAATCGAAAGTTACAAGAGCAAATTCTACAAAATTCTGGAAGCATCATCAGTGAGTATCTTCCAGAGACTC
AGCCTATTTCACGTAATTTTCCTTATCGAAATCGTATTGTGAGCGGTTTAAGTCTAGGTGTTCTTGTCGCAGAAGCACAA
TTGGGTAGCGGCTCATTAATTACCGCTCAAACGGCGGCTGAACAAGGTAAAATTATTTTTGCCATTCCTGGGCATATTTA
TGGAGAACACCACCAAGGTTGCCATCAACTCATTCGTGAGGGTGCAATCCTTGTTGATCATCCTGAACAAATTGTGGAAG
ATTTAGCTCTACCCACCCAATGGCAATGTACACAACAAGCCGAAACCAACTCACAGCCCCCTGAAATTCCTGAATATTTA
TTCCAACTCTACCAATTACTAGATTGGATTGGGCAAGACCTAGATACATTGGCTCAAAAATCCAAACTCAACACCGCACA
ATTAACCAGTTATTTGATGGAATTAGAACTGTTGGGACTGTGCATTCAACAATCTGGACTATACTTACGTTGCCGAGTCA
GCTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9ECF8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.133

100

0.661

  dprA Acinetobacter baumannii D1279779

64.456

100

0.648

  dprA Acinetobacter baylyi ADP1

61.358

100

0.627

  dprA Haemophilus influenzae Rd KW20

38.992

100

0.392


Multiple sequence alignment