Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CO686_RS04090 Genome accession   NZ_CP023507
Coordinates   822488..822670 (+) Length   60 a.a.
NCBI ID   WP_065371818.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817488..827670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS04080 (CO686_04080) uvrB 819324..821312 (+) 1989 WP_000610417.1 excinuclease ABC subunit UvrB Machinery gene
  CO686_RS04085 (CO686_04085) - 821353..822390 (+) 1038 WP_000125532.1 acyltransferase -
  CO686_RS04090 (CO686_04090) uvrB 822488..822670 (+) 183 WP_065371818.1 UvrB/UvrC motif-containing protein Machinery gene
  CO686_RS04095 (CO686_04095) - 822685..823311 (+) 627 WP_049549944.1 NAD(P)H-dependent oxidoreductase -
  CO686_RS04100 (CO686_04100) - 823320..823883 (+) 564 WP_049549943.1 GNAT family protein -
  CO686_RS04105 (CO686_04105) - 823849..824370 (+) 522 WP_049549942.1 GNAT family N-acetyltransferase -
  CO686_RS04120 (CO686_04120) - 825440..825997 (+) 558 WP_049549940.1 hypothetical protein -
  CO686_RS04125 (CO686_04125) - 825975..826412 (+) 438 WP_049549939.1 hypothetical protein -
  CO686_RS04130 (CO686_04130) - 826438..826905 (+) 468 WP_049549938.1 8-oxo-dGTP diphosphatase -
  CO686_RS04135 (CO686_04135) - 826902..827417 (-) 516 WP_000159158.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6989.09 Da        Isoelectric Point: 4.4944

>NTDB_id=207699 CO686_RS04090 WP_065371818.1 822488..822670(+) (uvrB) [Streptococcus oralis strain FDAARGOS_367]
MTKSVAKEEDKEVDINSLNKQERKELVKKLEKQIQEAVEVLDFELAAQIRDMMLEVKALD

Nucleotide


Download         Length: 183 bp        

>NTDB_id=207699 CO686_RS04090 WP_065371818.1 822488..822670(+) (uvrB) [Streptococcus oralis strain FDAARGOS_367]
GTGACTAAATCAGTAGCTAAGGAAGAGGACAAGGAAGTCGATATCAATAGCCTCAACAAACAAGAACGCAAAGAACTCGT
CAAAAAACTCGAAAAACAAATACAAGAAGCCGTCGAAGTGCTTGATTTCGAGTTGGCTGCTCAGATACGCGATATGATGT
TGGAAGTCAAGGCGTTGGATTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(24-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

95

100

0.95
  uvrB Streptococcus pneumoniae TIGR4

95

100

0.95
  uvrB Streptococcus pneumoniae D39

95

100

0.95