Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CO686_RS04080 Genome accession   NZ_CP023507
Coordinates   819324..821312 (+) Length   662 a.a.
NCBI ID   WP_000610417.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 814324..826312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS04065 (CO686_04065) zwf 814601..816088 (-) 1488 WP_096753546.1 glucose-6-phosphate dehydrogenase -
  CO686_RS04070 (CO686_04070) - 816238..816978 (-) 741 WP_001096337.1 amino acid ABC transporter ATP-binding protein -
  CO686_RS04075 (CO686_04075) - 816978..819143 (-) 2166 WP_096753547.1 ABC transporter substrate-binding protein/permease -
  CO686_RS04080 (CO686_04080) uvrB 819324..821312 (+) 1989 WP_000610417.1 excinuclease ABC subunit UvrB Machinery gene
  CO686_RS04085 (CO686_04085) - 821353..822390 (+) 1038 WP_000125532.1 acyltransferase -
  CO686_RS04090 (CO686_04090) uvrB 822488..822670 (+) 183 WP_065371818.1 UvrB/UvrC motif-containing protein Machinery gene
  CO686_RS04095 (CO686_04095) - 822685..823311 (+) 627 WP_049549944.1 NAD(P)H-dependent oxidoreductase -
  CO686_RS04100 (CO686_04100) - 823320..823883 (+) 564 WP_049549943.1 GNAT family protein -
  CO686_RS04105 (CO686_04105) - 823849..824370 (+) 522 WP_049549942.1 GNAT family N-acetyltransferase -
  CO686_RS04120 (CO686_04120) - 825440..825997 (+) 558 WP_049549940.1 hypothetical protein -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75829.96 Da        Isoelectric Point: 4.6250

>NTDB_id=207698 CO686_RS04080 WP_000610417.1 819324..821312(+) (uvrB) [Streptococcus oralis strain FDAARGOS_367]
MINRITDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYG
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFVTNDDHMEVAIVKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYENEQTETVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
VTQSMQRAIDETARRRKIQMSYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAV
EVLDFELAAQIRDMMLEVKALN

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=207698 CO686_RS04080 WP_000610417.1 819324..821312(+) (uvrB) [Streptococcus oralis strain FDAARGOS_367]
ATGATTAATAGAATTACAGATAATAAATTTAAACTAGTATCAAAATACCAACCTTCAGGAGATCAACCCCAAGCGATTGA
GCAGTTGGTTGACAATATCGAAGGTGGAGAGAAGGCCCAAATTTTGATGGGGGCGACGGGTACAGGGAAGACCTATACCA
TGAGTCAGGTCATTTCCAAAGTTAATAAACCAACTTTGGTCATTGCCCATAACAAAACGCTAGCTGGGCAGCTCTATGGA
GAGTTCAAGGAATTTTTCCCTGAAAATGCAGTCGAGTACTTCGTATCCTACTATGATTATTATCAACCAGAGGCCTATGT
CCCTTCGAGCGATACCTATATTGAGAAGGATAGCTCGGTCAATGATGAGATTGACAAGCTTCGACACTCAGCGACTTCAG
CTCTTCTGGAGCGTAACGATGTCATCGTCGTAGCTTCTGTCTCTTGTATCTATGGTTTGGGTTCGCCCAAGGAATATTCT
GATAGTGTTGTTAGTCTTCGTCCAGGTCTGGAGATTTCTCGTGATAAACTCTTGAATGACTTGGTTGATATTCAGTTTGA
ACGCAATGATATTGATTTCCAACGGGGAAGATTTCGCGTTCGCGGGGATGTGGTGGAGATTTTCCCAGCTTCTCGTGATG
AACACGCTTTTCGAGTAGAGTTTTTCGGTGATGAGATTGACCGTATCCGTGAGGTTGAGGCTTTGACAGGTCAGGTATTG
GGTGAAGTGGATCATTTGGCGATTTTCCCTGCCACTCACTTTGTGACCAATGACGACCACATGGAAGTTGCGATTGTGAA
AATTCAGGCAGAGTTGGAGGAGCAGTTGGCTGTCTTTGAAAAGGAAGGCAAACTGCTAGAAGCTCAGCGTTTGAAACAGC
GGACAGAGTACGATATCGAAATGCTGCGTGAGATGGGTTATACCAACGGTGTCGAAAACTACTCCCGCCACATGGATGGT
CGTAGCGAAGGAGAGCCTCCTTATACGCTTCTTGACTTCTTCCCAGATGATTTCTTGATTATGATTGATGAAAGTCACAT
GACTATGGGGCAAATAAAGGGCATGTACAATGGAGACCGTTCTCGTAAGGAAATGTTGGTCAATTATGGTTTCCGTTTGC
CGTCTGCCTTAGATAATCGTCCTCTCCGTCGGGAGGAGTTTGAGAGTCATGTGCATCAGATTGTATACGTTTCAGCGACA
CCAGGTGACTATGAAAATGAACAGACCGAGACAGTGATCGAGCAAATCATTCGTCCAACAGGGCTCTTGGATCCTGAAGT
GGAAGTCCGTCCAACTATGGGACAGATTGATGACCTCCTAGGTGAAATCAATGCCCGTGTTGAAAAGAATGAACGAACCT
TTATCACAACCTTGACCAAGAAGATGGCAGAAGACTTGACCGACTACTTCAAAGAAATGGGCATCAAGGTCAAGTATATG
CACTCGGATATCAAAACCTTGGAGCGGACGGAGATTATCCGTGACCTACGTTTGGGTGTTTTTGATGTTTTGGTCGGAAT
CAATCTGCTCCGCGAAGGGATTGACGTTCCTGAGGTAAGCTTGGTTGCTATTCTAGATGCTGACAAGGAAGGTTTCCTTC
GTAACGAACGTGGATTGATTCAGACCATTGGACGTGCTGCTCGCAATAGCGAAGGGCATGTCATCATGTATGCAGACACG
GTGACCCAGTCTATGCAACGTGCTATTGATGAAACGGCTCGTCGTCGGAAAATCCAGATGTCTTATAATGAAGAGCATGG
TATCGTACCTCAGACAATCAAGAAAGAAATCCGTGACCTGATTGCTGTAACTAAGGCAGTTGCTAAGGAAGAGGACAAGG
AAGTCGATATCAATAGCCTCAACAAACAAGAACGTAAGGAACTCGTCAAGAAACTCGAAAAACAAATGCAAGAAGCCGTC
GAAGTGCTTGACTTTGAACTGGCTGCTCAGATCCGCGATATGATGCTGGAAGTGAAGGCGTTAAACTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(626-660)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

99.094

100

0.991
  uvrB Streptococcus pneumoniae D39

99.094

100

0.991
  uvrB Streptococcus pneumoniae TIGR4

98.943

100

0.989