Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   BS064_RS01930 Genome accession   NZ_CP018254
Coordinates   407425..408426 (+) Length   333 a.a.
NCBI ID   WP_000079202.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AF-401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402425..413426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS064_RS21030 - 404005..404135 (-) 131 Protein_356 hypothetical protein -
  BS064_RS01905 (BS064_01895) rpoZ 404174..404452 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BS064_RS01910 (BS064_01900) gmk 404525..405154 (-) 630 WP_000015937.1 guanylate kinase -
  BS064_RS01915 (BS064_01905) ispH 405277..406227 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BS064_RS01920 (BS064_01910) fimU 406397..406870 (+) 474 WP_001214057.1 pilus assembly FimT family protein Machinery gene
  BS064_RS01925 (BS064_01915) pilV 406864..407424 (+) 561 WP_094474343.1 type IV pilus modification protein PilV Machinery gene
  BS064_RS01930 (BS064_01920) pilW 407425..408426 (+) 1002 WP_000079202.1 PilW family protein Machinery gene
  BS064_RS01935 (BS064_01925) pilX 408423..409241 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BS064_RS01940 (BS064_01930) - 409253..413106 (+) 3854 Protein_364 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35838.56 Da        Isoelectric Point: 6.1010

>NTDB_id=207676 BS064_RS01930 WP_000079202.1 407425..408426(+) (pilW) [Acinetobacter baumannii strain AF-401]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMTRDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNVNFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGMNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=207676 BS064_RS01930 WP_000079202.1 407425..408426(+) (pilW) [Acinetobacter baumannii strain AF-401]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCCAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGACACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATGTTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTATGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.498

100

0.985

Multiple sequence alignment