Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BS064_RS01935 Genome accession   NZ_CP018254
Coordinates   408423..409241 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain AF-401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403423..414241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS064_RS21030 - 404005..404135 (-) 131 Protein_356 hypothetical protein -
  BS064_RS01905 (BS064_01895) rpoZ 404174..404452 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BS064_RS01910 (BS064_01900) gmk 404525..405154 (-) 630 WP_000015937.1 guanylate kinase -
  BS064_RS01915 (BS064_01905) ispH 405277..406227 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BS064_RS01920 (BS064_01910) fimU 406397..406870 (+) 474 WP_001214057.1 pilus assembly FimT family protein Machinery gene
  BS064_RS01925 (BS064_01915) pilV 406864..407424 (+) 561 WP_094474343.1 type IV pilus modification protein PilV Machinery gene
  BS064_RS01930 (BS064_01920) pilW 407425..408426 (+) 1002 WP_000079202.1 PilW family protein Machinery gene
  BS064_RS01935 (BS064_01925) pilX 408423..409241 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BS064_RS01940 (BS064_01930) - 409253..413106 (+) 3854 Protein_364 PilC/PilY family type IV pilus protein -
  BS064_RS01945 (BS064_01935) pilY2 413119..413601 (+) 483 WP_001046422.1 type IV pilin protein Machinery gene
  BS064_RS01950 (BS064_01940) pilE 413598..414023 (+) 426 WP_000788343.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=207677 BS064_RS01935 WP_000149377.1 408423..409241(+) (pilX) [Acinetobacter baumannii strain AF-401]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=207677 BS064_RS01935 WP_000149377.1 408423..409241(+) (pilX) [Acinetobacter baumannii strain AF-401]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATCTCTGTAGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCGAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment