Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | BS064_RS01920 | Genome accession | NZ_CP018254 |
| Coordinates | 406397..406870 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214057.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AF-401 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 401397..411870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS064_RS01900 (BS064_01890) | - | 401859..403964 (-) | 2106 | WP_001117590.1 | RelA/SpoT family protein | - |
| BS064_RS21030 | - | 404005..404135 (-) | 131 | Protein_356 | hypothetical protein | - |
| BS064_RS01905 (BS064_01895) | rpoZ | 404174..404452 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| BS064_RS01910 (BS064_01900) | gmk | 404525..405154 (-) | 630 | WP_000015937.1 | guanylate kinase | - |
| BS064_RS01915 (BS064_01905) | ispH | 405277..406227 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| BS064_RS01920 (BS064_01910) | fimU | 406397..406870 (+) | 474 | WP_001214057.1 | pilus assembly FimT family protein | Machinery gene |
| BS064_RS01925 (BS064_01915) | pilV | 406864..407424 (+) | 561 | WP_094474343.1 | type IV pilus modification protein PilV | Machinery gene |
| BS064_RS01930 (BS064_01920) | pilW | 407425..408426 (+) | 1002 | WP_000079202.1 | PilW family protein | Machinery gene |
| BS064_RS01935 (BS064_01925) | pilX | 408423..409241 (+) | 819 | WP_000149377.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16863.51 Da Isoelectric Point: 8.5355
>NTDB_id=207674 BS064_RS01920 WP_001214057.1 406397..406870(+) (fimU) [Acinetobacter baumannii strain AF-401]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLEIKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLEIKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=207674 BS064_RS01920 WP_001214057.1 406397..406870(+) (fimU) [Acinetobacter baumannii strain AF-401]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAATTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAATTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
99.363 |
100 |
0.994 |