Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   CO204_RS07935 Genome accession   NZ_CP023477
Coordinates   1562133..1562798 (-) Length   221 a.a.
NCBI ID   WP_106006808.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557133..1567798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS07915 (CO204_07880) - 1557853..1558488 (+) 636 WP_019321473.1 hypothetical protein -
  CO204_RS07920 (CO204_07885) - 1558568..1560268 (-) 1701 WP_019803194.1 zinc ribbon domain-containing protein -
  CO204_RS07925 (CO204_07890) - 1560288..1561382 (-) 1095 WP_002266342.1 hypothetical protein -
  CO204_RS07930 (CO204_07895) raiA 1561506..1562054 (-) 549 WP_002263024.1 ribosome-associated translation inhibitor RaiA -
  CO204_RS07935 (CO204_07900) comFC/cflB 1562133..1562798 (-) 666 WP_106006808.1 ComF family protein Machinery gene
  CO204_RS07940 (CO204_07905) comFA/cflA 1562795..1564096 (-) 1302 WP_106006809.1 DEAD/DEAH box helicase Machinery gene
  CO204_RS07945 (CO204_07910) - 1564169..1564798 (+) 630 WP_002272858.1 YigZ family protein -
  CO204_RS07950 (CO204_07915) cysK 1564889..1565815 (+) 927 WP_106006810.1 cysteine synthase A -
  CO204_RS07955 (CO204_07920) - 1566149..1567240 (-) 1092 WP_002263029.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26013.04 Da        Isoelectric Point: 8.9825

>NTDB_id=207461 CO204_RS07935 WP_106006808.1 1562133..1562798(-) (comFC/cflB) [Streptococcus mutans strain LAR01]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVILVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=207461 CO204_RS07935 WP_106006808.1 1562133..1562798(-) (comFC/cflB) [Streptococcus mutans strain LAR01]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
ACTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(170-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439

Multiple sequence alignment