Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   CO204_RS07710 Genome accession   NZ_CP023477
Coordinates   1519802..1520458 (+) Length   218 a.a.
NCBI ID   WP_002264438.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1514802..1525458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS07675 (CO204_07640) - 1515037..1515291 (-) 255 WP_002262064.1 DUF3165 family protein -
  CO204_RS07680 (CO204_07645) typA 1515320..1517164 (-) 1845 WP_024783000.1 translational GTPase TypA -
  CO204_RS07690 (CO204_07655) - 1517398..1517787 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  CO204_RS07695 (CO204_07660) - 1517797..1518768 (-) 972 WP_002262061.1 ROK family glucokinase -
  CO204_RS07700 (CO204_07665) - 1518761..1518967 (-) 207 WP_002262060.1 YqgQ family protein -
  CO204_RS07705 (CO204_07670) dpr 1519174..1519701 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  CO204_RS07710 (CO204_07675) cclA/cilC 1519802..1520458 (+) 657 WP_002264438.1 A24 family peptidase Machinery gene
  CO204_RS07715 (CO204_07680) trpA 1520695..1521477 (-) 783 WP_019313117.1 tryptophan synthase subunit alpha -
  CO204_RS07720 (CO204_07685) trpB 1521481..1522692 (-) 1212 WP_019313116.1 tryptophan synthase subunit beta -
  CO204_RS07725 (CO204_07690) - 1522689..1523270 (-) 582 WP_019313115.1 phosphoribosylanthranilate isomerase -
  CO204_RS07730 (CO204_07695) trpC 1523257..1524024 (-) 768 WP_019313114.1 indole-3-glycerol phosphate synthase TrpC -
  CO204_RS07735 (CO204_07700) trpD 1524017..1525024 (-) 1008 WP_106006802.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24859.09 Da        Isoelectric Point: 8.5763

>NTDB_id=207458 CO204_RS07710 WP_002264438.1 1519802..1520458(+) (cclA/cilC) [Streptococcus mutans strain LAR01]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=207458 CO204_RS07710 WP_002264438.1 1519802..1520458(+) (cclA/cilC) [Streptococcus mutans strain LAR01]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

43.256

98.624

0.427

  cclA/cilC Streptococcus mitis NCTC 12261

42.326

98.624

0.417

  cclA/cilC Streptococcus pneumoniae Rx1

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae D39

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae R6

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae TIGR4

41.784

97.706

0.408