Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   CO204_RS07250 Genome accession   NZ_CP023477
Coordinates   1424899..1425837 (-) Length   312 a.a.
NCBI ID   WP_002261897.1    Uniprot ID   Q8DV62
Organism   Streptococcus mutans strain LAR01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1419899..1430837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS07230 (CO204_07200) prsA 1420424..1421425 (-) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -
  CO204_RS07235 (CO204_07205) - 1421487..1422194 (-) 708 WP_002275166.1 O-methyltransferase -
  CO204_RS07240 (CO204_07210) - 1422244..1422861 (-) 618 WP_019313144.1 HAD-IA family hydrolase -
  CO204_RS07245 (CO204_07215) pepF 1423078..1424877 (-) 1800 WP_019313143.1 oligoendopeptidase F Regulator
  CO204_RS07250 (CO204_07220) coiA 1424899..1425837 (-) 939 WP_002261897.1 competence protein CoiA family protein Machinery gene
  CO204_RS07255 (CO204_07225) - 1426144..1427037 (-) 894 WP_002267117.1 alpha/beta hydrolase -
  CO204_RS07260 (CO204_07230) - 1427143..1427424 (-) 282 WP_025988629.1 hypothetical protein -
  CO204_RS10750 - 1427509..1427636 (+) 128 Protein_1363 ArsR/SmtB family transcription factor -
  CO204_RS07270 (CO204_07235) - 1427668..1428636 (-) 969 WP_002304278.1 alcohol dehydrogenase catalytic domain-containing protein -
  CO204_RS07275 (CO204_07240) - 1428764..1430137 (+) 1374 WP_002276533.1 PLP-dependent aminotransferase family protein -
  CO204_RS07280 (CO204_07245) - 1430191..1430691 (-) 501 WP_019313142.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36721.05 Da        Isoelectric Point: 8.7637

>NTDB_id=207451 CO204_RS07250 WP_002261897.1 1424899..1425837(-) (coiA) [Streptococcus mutans strain LAR01]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSNLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=207451 CO204_RS07250 WP_002261897.1 1424899..1425837(-) (coiA) [Streptococcus mutans strain LAR01]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCACCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAACTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DV62

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

99.038

0.468

  coiA Streptococcus pneumoniae Rx1

46.278

99.038

0.458

  coiA Streptococcus pneumoniae D39

46.278

99.038

0.458

  coiA Streptococcus pneumoniae R6

46.278

99.038

0.458

  coiA Streptococcus pneumoniae TIGR4

45.955

99.038

0.455

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41


Multiple sequence alignment