Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BK815_RS08540 Genome accession   NZ_CP018199
Coordinates   1745656..1746177 (-) Length   173 a.a.
NCBI ID   WP_046836916.1    Uniprot ID   A0A1S2MQH3
Organism   Staphylococcus succinus strain 14BME20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1740656..1751177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS08540 ssbA 1745656..1746177 (-) 522 WP_046836916.1 single-stranded DNA-binding protein Machinery gene
  BK815_RS08545 rpsF 1746196..1746501 (-) 306 WP_046836917.1 30S ribosomal protein S6 -
  BK815_RS08550 - 1746934..1747740 (+) 807 WP_046836918.1 GH25 family lysozyme -
  BK815_RS08555 ychF 1747901..1748998 (-) 1098 WP_046836919.1 redox-regulated ATPase YchF -
  BK815_RS08560 - 1748999..1749214 (-) 216 WP_046836920.1 DUF951 domain-containing protein -
  BK815_RS08565 - 1749235..1750119 (-) 885 WP_073505107.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19133.61 Da        Isoelectric Point: 4.9056

>NTDB_id=207087 BK815_RS08540 WP_046836916.1 1745656..1746177(-) (ssbA) [Staphylococcus succinus strain 14BME20]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNSQDYGQSFGGQQSGQNTSSYQNNNNNSSNNNAQSNNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=207087 BK815_RS08540 WP_046836916.1 1745656..1746177(-) (ssbA) [Staphylococcus succinus strain 14BME20]
ATGATAAATAGAGTTGTTTTAGTTGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCTTAGCGGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATAAACTGTGTTGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATCAAAAGGTAGTTTGGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTAACAGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGCCATGCTCAAGAAGGGAATAACAATTCTCAAGATTATGGACAAAGTTTTGGAGGGCAACAATCAGGTC
AAAATACGTCATCTTATCAAAACAACAACAATAATTCATCGAATAATAATGCTCAATCAAACAATCCATTTGCTAATGCA
AACGGACCGATTGATATTAGCGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MQH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.89

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.491

100

0.555
  ssb Glaesserella parasuis strain SC1401

34.375

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.584

0.37

Multiple sequence alignment