Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSL056_RS17705 Genome accession   NZ_CP018197
Coordinates   3413107..3413796 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain KCTC 12796BP     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408107..3418796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS17670 (BSL056_17690) - 3408186..3408668 (-) 483 WP_024423619.1 flagellar protein FlgN -
  BSL056_RS17675 (BSL056_17695) flgM 3408687..3408950 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSL056_RS17680 (BSL056_17700) - 3409030..3409449 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  BSL056_RS20970 (BSL056_17705) comFC 3409506..3410162 (-) 657 WP_238549993.1 ComF family protein Machinery gene
  BSL056_RS17690 (BSL056_17710) - 3410189..3410482 (-) 294 WP_024423623.1 competence protein ComFB -
  BSL056_RS17695 (BSL056_17715) comFA 3410531..3411928 (-) 1398 WP_145925737.1 DEAD/DEAH box helicase Machinery gene
  BSL056_RS17700 (BSL056_17720) - 3412049..3412891 (-) 843 WP_024423625.1 DegV family protein -
  BSL056_RS17705 (BSL056_17725) degU 3413107..3413796 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BSL056_RS17710 (BSL056_17730) degS 3413861..3415036 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BSL056_RS17715 (BSL056_17735) - 3415257..3415925 (+) 669 WP_012011434.1 YigZ family protein -
  BSL056_RS17720 (BSL056_17740) - 3415910..3417001 (+) 1092 WP_024423626.1 LCP family protein -
  BSL056_RS17725 (BSL056_17745) - 3417037..3418104 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=207052 BSL056_RS17705 WP_008348273.1 3413107..3413796(-) (degU) [Bacillus safensis strain KCTC 12796BP]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=207052 BSL056_RS17705 WP_008348273.1 3413107..3413796(-) (degU) [Bacillus safensis strain KCTC 12796BP]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment