Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BSL056_RS17695 Genome accession   NZ_CP018197
Coordinates   3410531..3411928 (-) Length   465 a.a.
NCBI ID   WP_145925737.1    Uniprot ID   -
Organism   Bacillus safensis strain KCTC 12796BP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405531..3416928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS17660 (BSL056_17680) flgL 3405732..3406640 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  BSL056_RS17665 (BSL056_17685) flgK 3406650..3408170 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  BSL056_RS17670 (BSL056_17690) - 3408186..3408668 (-) 483 WP_024423619.1 flagellar protein FlgN -
  BSL056_RS17675 (BSL056_17695) flgM 3408687..3408950 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSL056_RS17680 (BSL056_17700) - 3409030..3409449 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  BSL056_RS20970 (BSL056_17705) comFC 3409506..3410162 (-) 657 WP_238549993.1 ComF family protein Machinery gene
  BSL056_RS17690 (BSL056_17710) - 3410189..3410482 (-) 294 WP_024423623.1 competence protein ComFB -
  BSL056_RS17695 (BSL056_17715) comFA 3410531..3411928 (-) 1398 WP_145925737.1 DEAD/DEAH box helicase Machinery gene
  BSL056_RS17700 (BSL056_17720) - 3412049..3412891 (-) 843 WP_024423625.1 DegV family protein -
  BSL056_RS17705 (BSL056_17725) degU 3413107..3413796 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BSL056_RS17710 (BSL056_17730) degS 3413861..3415036 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BSL056_RS17715 (BSL056_17735) - 3415257..3415925 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53205.08 Da        Isoelectric Point: 9.9068

>NTDB_id=207051 BSL056_RS17695 WP_145925737.1 3410531..3411928(-) (comFA) [Bacillus safensis strain KCTC 12796BP]
MNLDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKATECGFLYEWTGPQMVETCRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIIDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPVPTFHWIGHWKKKLKKNQLPPKVMNWIQ
RHIANRRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=207051 BSL056_RS17695 WP_145925737.1 3410531..3411928(-) (comFA) [Bacillus safensis strain KCTC 12796BP]
TTGAATTTGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGATTAGTCAATCGGTCTCCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAGGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTACTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTACGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTATAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCGTAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATACAG
AGACATATTGCAAATAGGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGAGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATATCTGGACGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

98.065

0.516
  comFA/cflA Streptococcus pneumoniae Rx1

38.269

94.409

0.361
  comFA/cflA Streptococcus pneumoniae D39

38.269

94.409

0.361
  comFA/cflA Streptococcus pneumoniae R6

38.269

94.409

0.361

Multiple sequence alignment