Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GbCGDNIH6_RS06225 Genome accession   NZ_CP018192
Coordinates   1351290..1351811 (-) Length   173 a.a.
NCBI ID   WP_072564408.1    Uniprot ID   -
Organism   Granulibacter bethesdensis strain NIH6.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1346290..1356811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GbCGDNIH6_RS06200 (GbCGDNIH6_1216) - 1346603..1346902 (+) 300 WP_157692341.1 hypothetical protein -
  GbCGDNIH6_RS06210 (GbCGDNIH6_1217) - 1347164..1347667 (-) 504 WP_072564406.1 peptidylprolyl isomerase -
  GbCGDNIH6_RS06215 (GbCGDNIH6_1218) coaD 1347760..1348311 (-) 552 WP_025286636.1 pantetheine-phosphate adenylyltransferase -
  GbCGDNIH6_RS06220 (GbCGDNIH6_1219) gyrA 1348304..1351126 (-) 2823 WP_408874754.1 DNA gyrase subunit A -
  GbCGDNIH6_RS06225 (GbCGDNIH6_1220) ssb 1351290..1351811 (-) 522 WP_072564408.1 single-stranded DNA-binding protein Machinery gene
  GbCGDNIH6_RS06230 (GbCGDNIH6_1221) uvrA 1351979..1354849 (+) 2871 WP_072563234.1 excinuclease ABC subunit UvrA -
  GbCGDNIH6_RS06235 (GbCGDNIH6_1223) - 1355168..1355374 (+) 207 WP_072563235.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18586.38 Da        Isoelectric Point: 6.4931

>NTDB_id=206970 GbCGDNIH6_RS06225 WP_072564408.1 1351290..1351811(-) (ssb) [Granulibacter bethesdensis strain NIH6.1]
MAGSVNKVILIGNLGRDPEVRNTQDGGKVVNFTLATSETWNDRASGERKERTEWHRVVVFNDRLADIAERYLRKGTKVYV
EGALQTRKWTDQAGQEKYTTEVVISRFRGEITMLDSRSSGEGAGEGGGYRSAPAQRAPSGGGSGLGGGNSRPASGGSGWE
PSHGGDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=206970 GbCGDNIH6_RS06225 WP_072564408.1 1351290..1351811(-) (ssb) [Granulibacter bethesdensis strain NIH6.1]
ATGGCTGGCAGTGTCAATAAGGTCATTCTGATCGGTAATCTCGGGCGCGACCCCGAGGTTCGCAATACCCAGGATGGCGG
CAAGGTGGTGAATTTTACGCTCGCAACCAGCGAAACGTGGAATGATCGTGCTTCCGGTGAGCGGAAAGAACGAACCGAAT
GGCATCGTGTGGTGGTCTTTAATGACCGGTTGGCGGATATCGCCGAACGCTATCTGCGCAAGGGCACCAAGGTCTATGTC
GAAGGGGCGCTCCAGACCAGGAAATGGACCGACCAGGCCGGACAGGAAAAATACACCACTGAGGTCGTGATCAGTCGCTT
CCGTGGTGAAATCACCATGCTGGATAGCCGCTCGAGCGGGGAGGGGGCTGGTGAAGGCGGTGGTTATCGGTCTGCTCCCG
CCCAGCGTGCGCCATCCGGCGGCGGCAGCGGATTGGGTGGTGGCAACAGCCGCCCTGCATCCGGCGGCAGTGGCTGGGAA
CCTTCTCATGGCGGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.52
  ssb Vibrio cholerae strain A1552

49.143

100

0.497
  ssb Neisseria gonorrhoeae MS11

41.304

100

0.439
  ssb Neisseria meningitidis MC58

41.304

100

0.439

Multiple sequence alignment